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JN116828.1__AEV52220.1__X__00007

Bact-Vir

JN116828.1__AEV52220.1__X__00007

Identity

Accession:
JN116828 ↗
Kingdom:
phage

Quality

59.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
D2 high residues 63-149
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 29.8 8.50e-07 74.7% 91.0%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.82 65.0 6.46e-01 82.8% 85.4%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.65 45.0 3.07e-01 78.2% 19.4%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 48.0 4.06e-01 82.8% 65.8%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 48.0 3.85e-01 82.8% 47.7%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.28e-01 73.6% 86.7%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 4.35e-01 74.7% 92.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 45.0 4.22e-01 81.6% 91.0%
4qdgA01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 3.76e-01 82.8% 50.9%
4ypjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.73e-01 71.3% 84.0%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 41.0 3.55e-01 71.3% 98.6%
3gf8A01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 46.0 3.80e-01 82.8% 51.3%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 4.23e-01 72.4% 88.6%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 41.0 3.95e-01 71.3% 82.0%
5nfiB01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.92e-01 82.8% 59.1%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.86e-01 72.4% 70.8%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 44.0 3.79e-01 79.3% 58.8%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 4.06e-01 73.6% 72.3%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.58 43.0 3.62e-01 78.2% 75.5%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.28e-01 75.9% 89.4%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.58 45.0 3.88e-01 82.8% 99.3%
3qpiA00 3.30.70.3420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 3.37e-01 75.9% 96.5%
1x5lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.02e-01 71.3% 86.4%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 4.07e-01 74.7% 79.3%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 4.12e-01 74.7% 83.3%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.73e-01 70.1% 84.8%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.57 41.0 3.48e-01 74.7% 68.8%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.57 45.0 3.84e-01 86.2% 82.3%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.68e-01 71.3% 86.1%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 38.0 3.74e-01 70.1% 82.7%
2ee2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.13e-01 75.9% 87.4%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.67e-01 71.3% 84.6%
5swsE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.79e-01 77.0% 89.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.53e-01 70.1% 86.2%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.56e-01 74.7% 80.8%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.90e-01 77.0% 83.3%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 37.0 3.03e-01 74.7% 37.2%
4p2qE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.63e-01 77.0% 85.3%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.65e-01 75.9% 88.3%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.84e-01 75.9% 82.1%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.55e-01 75.9% 87.8%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.90e-01 92.0% 79.7%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.03e-01 87.4% 90.6%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.52e-01 77.0% 86.0%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.52 40.0 4.26e-01 85.1% 95.9%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.75e-01 80.5% 97.1%
2esvE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.54e-01 77.0% 89.2%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.56e-01 80.5% 76.9%
2p8tA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.52 39.0 3.69e-01 81.6% 88.1%
1wj3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.09e-01 88.5% 89.2%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.38e-01 73.6% 77.9%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 36.0 3.45e-01 77.0% 89.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4236834 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.88 70.0 7.13e-01 82.8% 88.2%
4974405 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.87 70.0 6.90e-01 83.9% 88.9%
3588392 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.85 68.0 6.50e-01 83.9% 79.0%
4980287 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.83 60.0 6.15e-01 83.9% 77.6%
3666940 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.80 71.0 6.32e-01 95.4% 84.2%
3419007 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.79 71.0 6.42e-01 96.6% 84.3%
4929079 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.77 67.0 6.54e-01 93.1% 85.1%
5076895 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.77 70.0 6.42e-01 97.7% 90.9%
4995213 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 42.0 4.45e-01 73.6% 74.7%
5060238 11.1.1.533 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYR 0.65 45.0 4.45e-01 71.3% 82.2%
3218185 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 47.0 3.54e-01 78.2% 60.9%
5039154 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 46.0 4.57e-01 75.9% 87.8%
3897565 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 44.0 4.36e-01 72.4% 82.2%
5017141 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 3.83e-01 71.3% 75.0%
5071370 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 4.17e-01 73.6% 87.0%
5014975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 4.47e-01 72.4% 83.7%
5041022 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 44.0 3.87e-01 75.9% 73.1%
3531190 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 42.0 4.20e-01 71.3% 82.2%
5081040 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.10e-01 71.3% 87.4%
5083101 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 43.0 3.93e-01 74.7% 70.0%
5022921 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 3.95e-01 71.3% 80.0%
3936378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.04e-01 72.4% 84.0%
5070626 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.60 47.0 3.47e-01 87.4% 45.9%
3240576 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.60 41.0 4.10e-01 71.3% 87.8%
4025604 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.60 41.0 3.77e-01 70.1% 65.5%
3926888 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 3.79e-01 77.0% 88.9%
4398420 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.59 43.0 3.96e-01 78.2% 89.2%
3258806 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 44.0 4.21e-01 78.2% 100.0%
5020151 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 40.0 3.46e-01 70.1% 46.7%
3502357 11.1.1.905 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.59 42.0 3.79e-01 74.7% 78.3%
4978217 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.92e-01 71.3% 90.0%
3478086 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 41.0 4.06e-01 73.6% 86.3%
3217255 11.1.1.957 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_6th 0.59 40.0 3.78e-01 70.1% 77.1%
5016362 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.97e-01 71.3% 83.3%
4500385 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.58 42.0 3.58e-01 75.9% 57.9%
3181242 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.58 40.0 3.80e-01 72.4% 89.5%
4967732 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.58 39.0 3.28e-01 70.1% 42.6%
4355337 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.58 41.0 3.91e-01 73.6% 88.0%
3531179 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 40.0 4.04e-01 71.3% 85.9%
3414310 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.96e-01 77.0% 81.9%
5016531 11.1.1.347 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › T26-6p_Ig-like_dom_2 0.57 45.0 2.91e-01 82.8% 56.6%
3245882 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 40.0 3.65e-01 73.6% 59.2%
3936256 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.02e-01 74.7% 92.5%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 45.0 3.83e-01 86.2% 73.8%
3226169 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.88e-01 82.8% 84.8%
4101890 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 40.0 3.54e-01 77.0% 57.8%
5065792 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 45.0 3.72e-01 87.4% 69.0%
3839434 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.55 40.0 3.25e-01 75.9% 97.0%
5043896 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.93e-01 75.9% 90.0%
5027350 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.55 43.0 3.74e-01 86.2% 73.2%
4243265 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 39.0 3.28e-01 79.3% 48.1%
5011692 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 3.19e-01 75.9% 54.8%
4302120 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 39.0 3.71e-01 79.3% 74.3%
149640 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.53 38.0 3.50e-01 78.2% 76.7%
3742573 11.1.5.34 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › LAG1-DNAbind 0.52 36.0 3.21e-01 74.7% 72.6%
4627078 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.51 39.0 3.73e-01 82.8% 76.2%
3524331 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.58e-01 73.6% 73.3%
3878739 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 41.0 3.93e-01 88.5% 81.0%
5034902 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 40.0 3.41e-01 86.2% 71.7%
3504586 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.50 39.0 3.28e-01 94.3% 47.7%