←Back to structures
JN116828.1__AEV52281.1__X__00068
Bact-VirJN116828.1__AEV52281.1__X__00068
Identity
- Accession:
- JN116828 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-38
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 30.4 | 4.90e-07 | 97.1% | 63.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.95 | 86.0 | 5.58e-01 | 100.0% | 26.0% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.58 | 48.0 | 2.91e-01 | 100.0% | 14.5% |
| 4v19I01 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.57 | 46.0 | 3.98e-01 | 100.0% | 57.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4448977 | 378.1.1.15 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Col-Pyo_DNase | 0.97 | 88.0 | 5.64e-01 | 100.0% | 24.3% |
| 3278018 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.94 | 78.0 | 6.53e-01 | 94.1% | 56.4% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.93 | 79.0 | 6.35e-01 | 100.0% | 50.8% |
| 5060915 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.92 | 82.0 | 6.23e-01 | 100.0% | 45.3% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.90 | 76.0 | 5.99e-01 | 100.0% | 47.1% |
| 4517886 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.78 | 67.0 | 6.14e-01 | 100.0% | 75.6% |
| 3362574 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.75 | 60.0 | 5.78e-01 | 91.2% | 77.5% |
| 3513859 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 48.0 | 4.33e-01 | 100.0% | 86.0% |