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JN175269.1__AEO14579.1__MT_57033__00032
Bact-VirJN175269.1__AEO14579.1__MT_57033__00032
Identity
- Accession:
- JN175269 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-62
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.74 | 60.0 | 5.34e-01 | 91.1% | 97.6% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.67 | 52.0 | 4.65e-01 | 87.5% | 95.2% |
| 5abxA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.66 | 58.0 | 4.11e-01 | 100.0% | 32.9% |
| 2crmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 54.0 | 4.94e-01 | 100.0% | 68.4% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.65 | 56.0 | 3.99e-01 | 100.0% | 39.9% |
| 4wtxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 52.0 | 4.50e-01 | 100.0% | 55.7% |
| 1nezH00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 54.0 | 4.29e-01 | 98.2% | 84.2% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 54.0 | 4.03e-01 | 100.0% | 45.2% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.62 | 49.0 | 4.99e-01 | 91.1% | 92.5% |
| 5utkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 48.0 | 4.24e-01 | 100.0% | 56.7% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 46.0 | 3.98e-01 | 87.5% | 100.0% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 52.0 | 4.16e-01 | 100.0% | 52.1% |
| 1cfbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 4.22e-01 | 100.0% | 77.4% |
| 3fbkA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.60 | 51.0 | 3.93e-01 | 100.0% | 44.9% |
| 1x5xA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.18e-01 | 100.0% | 50.5% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 4.20e-01 | 98.2% | 73.5% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 45.0 | 4.12e-01 | 89.3% | 90.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.58 | 48.0 | 3.55e-01 | 100.0% | 47.1% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.12e-01 | 100.0% | 61.1% |
| 1fnfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 4.02e-01 | 100.0% | 58.4% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 4.14e-01 | 98.2% | 78.4% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.57 | 43.0 | 3.14e-01 | 89.3% | 45.9% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.56 | 42.0 | 3.11e-01 | 89.3% | 44.4% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 43.0 | 3.56e-01 | 91.1% | 66.9% |
| 6se8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 3.86e-01 | 98.2% | 75.9% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.55 | 45.0 | 3.83e-01 | 100.0% | 52.8% |
| 3d3bJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 42.0 | 3.80e-01 | 91.1% | 93.1% |
| 3kysA00 | 2.70.50.80 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.55 | 45.0 | 3.20e-01 | 100.0% | 82.2% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.55 | 44.0 | 3.43e-01 | 96.4% | 88.7% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.77e-01 | 100.0% | 58.0% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.55 | 41.0 | 4.08e-01 | 89.3% | 81.0% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 43.0 | 3.69e-01 | 100.0% | 57.7% |
| 3v6oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.95e-01 | 98.2% | 75.9% |
| 1iarB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.72e-01 | 100.0% | 57.6% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.53 | 43.0 | 3.59e-01 | 100.0% | 74.1% |
| 2wq4A01 | 2.60.120.760 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.51e-01 | 100.0% | 47.3% |
| 1y6kR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.72e-01 | 100.0% | 80.6% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.71e-01 | 100.0% | 64.1% |
| 1a8mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.31e-01 | 100.0% | 48.0% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 40.0 | 2.97e-01 | 87.5% | 38.4% |
| 3b2dC00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.26e-01 | 100.0% | 52.5% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 40.0 | 2.66e-01 | 98.2% | 38.0% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.56e-01 | 100.0% | 82.7% |
| 3gqqA00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.50 | 39.0 | 3.04e-01 | 100.0% | 75.4% |
| 4jdeA01 | 2.60.40.3820 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.24e-01 | 98.2% | 41.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3689024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.68 | 60.0 | 4.58e-01 | 100.0% | 68.5% |
| 3722266 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 58.0 | 4.48e-01 | 98.2% | 63.2% |
| 3886404 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.65 | 55.0 | 4.33e-01 | 100.0% | 48.0% |
| 3998442 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.63 | 52.0 | 3.84e-01 | 100.0% | 48.2% |
| 3927610 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 52.0 | 4.35e-01 | 100.0% | 74.3% |
| 3938430 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.61 | 50.0 | 3.72e-01 | 100.0% | 46.9% |
| 3802001 | 207.1.1.174 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 | 0.61 | 50.0 | 2.98e-01 | 100.0% | 14.4% |
| 3830329 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.61 | 50.0 | 3.45e-01 | 100.0% | 28.7% |
| 3995627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 54.0 | 4.70e-01 | 100.0% | 88.2% |
| 3488745 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.61 | 52.0 | 4.25e-01 | 100.0% | 66.4% |
| 3884631 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 51.0 | 4.28e-01 | 98.2% | 78.1% |
| 4180988 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.61 | 46.0 | 3.11e-01 | 87.5% | 20.9% |
| 3528793 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.61 | 51.0 | 4.16e-01 | 100.0% | 56.5% |
| 3437625 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.60 | 52.0 | 3.79e-01 | 100.0% | 45.5% |
| 4654177 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.60 | 48.0 | 3.22e-01 | 100.0% | 21.2% |
| 3478358 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 50.0 | 3.99e-01 | 100.0% | 56.0% |
| 3620456 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.60 | 52.0 | 4.22e-01 | 100.0% | 57.3% |
| 3832339 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.60 | 52.0 | 3.81e-01 | 100.0% | 42.6% |
| 5037079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 45.0 | 4.43e-01 | 89.3% | 86.2% |
| 3818855 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.59 | 50.0 | 3.64e-01 | 100.0% | 40.0% |
| 3368263 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.58 | 50.0 | 3.63e-01 | 100.0% | 40.0% |
| 3594101 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.57 | 46.0 | 3.46e-01 | 94.6% | 34.8% |
| 3909334 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 3.99e-01 | 100.0% | 78.0% |
| 2006900 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.56 | 46.0 | 3.94e-01 | 100.0% | 64.4% |
| 3790333 | 11.1.1.1009 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 | 0.55 | 45.0 | 3.25e-01 | 100.0% | 30.5% |
| 199962 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.55 | 41.0 | 4.08e-01 | 89.3% | 81.0% |
| 3499188 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.55 | 48.0 | 3.98e-01 | 98.2% | 88.0% |
| 3326623 | 221.1.1.166 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 | 0.55 | 45.0 | 4.23e-01 | 100.0% | 77.1% |
| None | — | 0.54 | 45.0 | 2.74e-01 | 100.0% | 18.7% | |
| 3698238 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.54 | 46.0 | 3.56e-01 | 100.0% | 77.0% |
| 3218957 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.54 | 46.0 | 3.74e-01 | 100.0% | 53.0% |
| 3840130 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.54 | 47.0 | 4.08e-01 | 96.4% | 77.6% |
| 3453549 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 3.65e-01 | 100.0% | 56.5% |
| 3407694 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 41.0 | 3.67e-01 | 91.1% | 62.4% |
| 3246054 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 41.0 | 2.58e-01 | 98.2% | 24.0% |
| 4952738 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.51 | 40.0 | 3.48e-01 | 100.0% | 57.8% |
| 3188391 | 11.1.1.926 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7136 | 0.50 | 40.0 | 2.98e-01 | 100.0% | 55.0% |
| 4427418 | 11.1.1.1229 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 | 0.50 | 41.0 | 3.61e-01 | 100.0% | 83.2% |
| 5042718 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.81e-01 | 100.0% | 74.7% |
| 3815426 | 11.1.4.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 | 0.50 | 42.0 | 3.46e-01 | 100.0% | 78.3% |