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JN254801.1__AFD10741.1__I7C_063c__00063

Bact-Vir

JN254801.1__AFD10741.1__I7C_063c__00063

Identity

Accession:
JN254801 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-47
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.98 92.0 7.73e-01 100.0% 67.1%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.98 92.0 5.63e-01 100.0% 26.7%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.96 91.0 8.10e-01 100.0% 80.6%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.96 90.0 5.52e-01 100.0% 20.7%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.93 87.0 7.68e-01 100.0% 78.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.93 85.0 7.61e-01 100.0% 82.5%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.93 86.0 7.14e-01 100.0% 61.8%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.92 84.0 7.16e-01 100.0% 70.8%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.92 81.0 6.75e-01 100.0% 59.5%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.91 87.0 7.14e-01 100.0% 64.5%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.91 80.0 6.21e-01 93.6% 48.9%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.91 76.0 7.49e-01 89.4% 100.0%
4uelA02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.91 83.0 7.03e-01 97.9% 63.9%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.91 83.0 7.67e-01 100.0% 86.2%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.91 79.0 7.56e-01 95.7% 92.6%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.91 82.0 5.68e-01 100.0% 35.5%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.90 72.0 6.52e-01 85.1% 72.1%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.90 81.0 7.28e-01 100.0% 79.7%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.90 78.0 6.60e-01 100.0% 60.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.89 80.0 6.65e-01 100.0% 68.4%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 70.0 6.03e-01 100.0% 56.2%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.88 80.0 6.64e-01 100.0% 71.8%
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.87 77.0 6.92e-01 100.0% 84.6%
1l5jA03 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.85 70.0 4.67e-01 95.7% 24.9%
1t7sA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.84 72.0 5.29e-01 100.0% 38.8%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.84 71.0 6.37e-01 100.0% 67.7%
4g80T00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.84 73.0 5.21e-01 100.0% 40.3%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.84 68.0 6.67e-01 91.5% 100.0%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.82 70.0 5.82e-01 100.0% 65.5%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 69.0 6.56e-01 100.0% 82.1%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.81 71.0 6.65e-01 100.0% 81.0%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.80 66.0 5.04e-01 100.0% 39.0%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 66.0 5.16e-01 100.0% 44.2%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 59.0 5.75e-01 89.4% 84.9%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.73 59.0 5.06e-01 100.0% 54.7%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 59.0 5.20e-01 100.0% 62.2%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.72 62.0 4.72e-01 97.9% 79.3%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 57.0 4.96e-01 100.0% 59.3%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.70 62.0 5.57e-01 100.0% 93.8%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.68 55.0 5.25e-01 100.0% 78.7%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 60.0 3.70e-01 100.0% 29.0%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.68 54.0 5.09e-01 100.0% 73.8%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 58.0 4.75e-01 100.0% 51.1%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.68 56.0 3.92e-01 93.6% 28.8%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.68 52.0 4.28e-01 89.4% 47.4%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 52.0 4.89e-01 93.6% 80.6%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.67 55.0 4.07e-01 100.0% 63.8%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.64 49.0 4.00e-01 100.0% 42.5%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.63 52.0 4.32e-01 100.0% 50.5%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.63 48.0 3.68e-01 97.9% 56.4%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.62 46.0 4.14e-01 83.0% 85.9%
2x6hA03 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.61 50.0 3.30e-01 91.5% 35.0%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.61 49.0 3.24e-01 93.6% 22.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618651 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.98 93.0 7.35e-01 100.0% 60.0%
4001186 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.97 92.0 5.83e-01 100.0% 26.8%
3504347 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.96 90.0 6.89e-01 100.0% 49.5%
3702347 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.95 88.0 5.74e-01 100.0% 98.9%
3476064 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.95 89.0 6.33e-01 100.0% 39.2%
5078788 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.94 88.0 6.87e-01 100.0% 52.2%
2570270 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.94 79.0 7.58e-01 89.4% 100.0%
3195418 192.8.1.376 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 0.93 85.0 6.60e-01 100.0% 60.0%
4468389 5086.1.1.101 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 0.93 85.0 6.12e-01 100.0% 39.2%
3486312 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.93 86.0 6.17e-01 100.0% 39.5%
4034201 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.92 78.0 7.14e-01 100.0% 71.7%
3486871 192.10.1.5 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › Helical_CED_Drosha 0.91 83.0 7.59e-01 100.0% 81.7%
3408508 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.91 72.0 5.90e-01 100.0% 50.0%
3521328 192.10.1.5 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › Helical_CED_Drosha 0.90 82.0 7.50e-01 100.0% 81.7%
3769844 4.1.1.310 beta barrels › SH3 › SH3 › SH3 › PF26050 0.90 82.0 5.58e-01 100.0% 32.7%
3888162 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.90 76.0 5.51e-01 100.0% 35.8%
3563618 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.90 76.0 5.61e-01 100.0% 39.1%
3761838 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.90 75.0 5.53e-01 100.0% 37.4%
3600361 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.89 75.0 5.85e-01 100.0% 45.3%
3598168 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.89 78.0 5.29e-01 100.0% 28.5%
4463205 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.88 81.0 4.54e-01 100.0% 9.8%
3810882 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.88 80.0 4.84e-01 100.0% 17.1%
3249236 4207.1.2.93 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RNA12 0.88 80.0 5.03e-01 100.0% 21.6%
5045487 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.88 80.0 5.72e-01 100.0% 40.8%
5033276 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.87 80.0 5.40e-01 100.0% 31.1%
3967290 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 78.0 6.78e-01 100.0% 67.1%
4000037 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.86 77.0 7.09e-01 100.0% 78.3%
3744658 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.86 70.0 3.93e-01 89.4% 11.8%
3876359 4207.1.2.105 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF26705 0.85 76.0 5.67e-01 100.0% 49.6%
4994340 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.85 75.0 5.32e-01 100.0% 33.6%
5039030 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 74.0 7.07e-01 100.0% 87.3%
3918275 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.84 74.0 5.17e-01 100.0% 32.4%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.83 69.0 4.42e-01 100.0% 20.5%
3634546 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.82 71.0 6.16e-01 100.0% 62.7%
3629808 3291.1.1.130 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 0.81 69.0 5.66e-01 100.0% 72.2%
4375086 605.1.1.108 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.80 66.0 6.27e-01 91.5% 83.6%
3531403 3914.1.1.0 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.77 63.0 6.26e-01 91.5% 100.0%
4229778 3390.1.1.0 extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 0.76 65.0 6.45e-01 100.0% 94.0%
3634125 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.75 64.0 5.98e-01 100.0% 85.0%
3343865 109.4.1.43 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP 0.75 62.0 4.01e-01 97.9% 20.0%
3514696 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.75 66.0 4.02e-01 100.0% 17.9%
3184585 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.75 67.0 5.83e-01 100.0% 72.9%
3859836 626.1.1.1 alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.75 64.0 3.70e-01 100.0% 10.9%
5072293 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.73 60.0 5.05e-01 100.0% 54.5%
3386706 221.8.1.0 a+b two layers › beta-Grasp › GfcC › GfcC 0.73 59.0 4.42e-01 97.9% 35.4%
4346136 605.1.1.108 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.72 62.0 5.56e-01 100.0% 69.2%
3700089 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 58.0 5.38e-01 100.0% 75.4%
3276222 316.1.1.56 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.67 59.0 3.78e-01 100.0% 20.9%