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JN371769.1__AFD02854.1__X__00013

Bact-Vir

JN371769.1__AFD02854.1__X__00013

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 268-332
PDB
D2 high residues 576-686
PDB
Domain cluster: rep: LR990834.1__CAD7757509.1__ATHO_20__00020__D167-317
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01551.30 best Peptidase_M23 51.2 1.60e-13 82.9% 79.2%
D3 medium residues 12-72
PDB
Domain cluster: representative
D4 medium residues 115-224
PDB
D5 medium residues 345-395
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.87 74.0 6.34e-01 94.1% 61.3%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.52e-01 100.0% 96.6%
3w04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 45.0 2.93e-01 92.2% 15.9%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.61 49.0 3.73e-01 92.2% 47.7%
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 3.05e-01 98.0% 78.0%
2wicA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 50.0 4.20e-01 100.0% 61.1%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.57 43.0 3.41e-01 80.4% 74.5%
7kznP01 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.55 44.0 3.76e-01 94.1% 92.5%
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 47.0 2.98e-01 98.0% 86.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 48.0 3.17e-01 100.0% 25.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599325 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.69 58.0 4.18e-01 96.1% 89.3%
5020381 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.67 55.0 3.37e-01 94.1% 17.0%
3728568 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.67 54.0 5.27e-01 98.0% 88.3%
3619168 3938.1.1.1 ↗ alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › hnRNP_Q_AcD 0.66 54.0 4.57e-01 98.0% 55.8%
3741345 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.65 54.0 4.79e-01 100.0% 75.0%
3643677 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.64 55.0 3.57e-01 100.0% 45.7%
4990704 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 45.0 3.56e-01 76.5% 38.1%
3413026 103.4.1.3 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.62 51.0 4.76e-01 100.0% 72.9%
3380884 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.61 47.0 4.15e-01 84.3% 76.0%
3709590 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 43.0 3.17e-01 80.4% 52.9%
3652236 4966.1.1.0 ↗ alpha arrays › inserted helical bundle subdomain in T7 RNA polymerase › inserted helical bundle subdomain in T7 RNA polymerase › inserted helical bundle subdomain in T7 RNA polymerase 0.57 44.0 3.86e-01 92.2% 83.5%
3197970 109.4.1.1311 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ 0.56 42.0 2.34e-01 84.3% 9.6%
4368214 7516.1.1.3 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2,Glyco_transf_7C 0.56 41.0 2.38e-01 84.3% 53.4%
3209343 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.56 47.0 3.38e-01 96.1% 52.9%
5045348 604.34.1.0 ↗ alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase 0.55 39.0 3.40e-01 74.5% 54.1%
4247702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 2.59e-01 88.2% 20.0%
3202676 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.53 38.0 2.67e-01 78.4% 21.6%
4019185 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.53 42.0 2.85e-01 90.2% 23.6%
D6 medium residues 396-490
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1or7C00 1.10.10.880 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti sigma-E protein RseA, N-terminal domain 0.54 29.0 3.35e-01 91.6% 71.2%