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JN371769.1__AFD02865.1__X__00024

Bact-Vir

JN371769.1__AFD02865.1__X__00024

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-84
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00513__D2-63
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 60.0 4.18e-01 83.7% 47.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.67e-01 80.0% 93.1%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 57.0 4.56e-01 80.0% 52.7%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 57.0 4.59e-01 83.7% 60.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.27e-01 81.2% 87.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 51.0 5.28e-01 78.8% 86.5%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 51.0 3.71e-01 82.5% 87.1%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 49.0 3.79e-01 82.5% 95.4%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.86e-01 81.2% 87.5%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 54.0 4.48e-01 100.0% 93.6%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 53.0 4.44e-01 100.0% 93.6%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 54.0 4.70e-01 100.0% 92.6%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 38.0 3.41e-01 85.0% 47.4%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 3.54e-01 80.0% 97.6%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.66e-01 92.5% 64.7%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.63e-01 92.5% 62.9%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 40.0 3.11e-01 82.5% 89.8%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 46.0 3.88e-01 100.0% 59.3%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 36.0 4.03e-01 87.5% 98.3%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.26e-01 88.7% 74.4%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.50 29.0 3.47e-01 85.0% 100.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3399422 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.88 58.0 5.43e-01 80.0% 56.8%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 58.0 4.97e-01 80.0% 45.8%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 57.0 4.96e-01 80.0% 47.0%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 58.0 5.69e-01 80.0% 64.7%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 60.0 5.59e-01 81.2% 60.0%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 56.0 6.44e-01 78.8% 91.7%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.83 57.0 6.51e-01 77.5% 95.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.82 52.0 6.14e-01 77.5% 94.5%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 53.0 6.07e-01 80.0% 91.7%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 4.82e-01 82.5% 45.0%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 49.0 4.67e-01 83.7% 55.8%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.72e-01 80.0% 90.0%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.74 56.0 5.77e-01 78.8% 93.3%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 52.0 5.80e-01 81.2% 93.8%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 40.0 4.23e-01 72.5% 70.0%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.63 49.0 3.79e-01 82.5% 95.4%
3536187 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.63 48.0 3.98e-01 81.2% 55.0%
1110850 206.1.1.30 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like 0.61 54.0 3.52e-01 100.0% 37.8%
4673289 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 43.0 3.32e-01 80.0% 97.1%
3476907 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 49.0 3.26e-01 96.2% 30.3%
4887870 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 44.0 3.51e-01 92.5% 60.6%
3580912 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.53 45.0 3.71e-01 97.5% 72.0%