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JN371769.1__AFD02874.1__X__00033

Bact-Vir

JN371769.1__AFD02874.1__X__00033

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13640.13 best 2OG-FeII_Oxy_3 29.3 1.90e-06 100.0% 60.2%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3itqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.92 86.0 5.65e-01 100.0% 31.9%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.68 56.0 4.31e-01 100.0% 54.7%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.64 51.0 4.22e-01 100.0% 54.1%
1uf2C02 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.54e-01 100.0% 43.3%
5aedA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 39.0 3.35e-01 88.5% 40.0%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 47.0 3.75e-01 100.0% 45.5%
2ln7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.58 48.0 3.53e-01 96.2% 73.5%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.57 43.0 3.40e-01 88.5% 56.7%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.56e-01 100.0% 39.7%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 42.0 3.60e-01 88.5% 61.5%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.66e-01 88.5% 56.0%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 43.0 2.81e-01 94.2% 33.8%
2lg7A00 2.60.60.50 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.54 42.0 3.43e-01 100.0% 64.3%
1kdgA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.54 40.0 2.77e-01 82.7% 72.5%
5f7uA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 36.0 3.34e-01 84.6% 48.7%
1iv8A05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 35.0 3.34e-01 84.6% 51.5%
2levA00 4.10.430.10 Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain 0.54 38.0 3.78e-01 76.9% 75.4%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.18e-01 75.0% 58.1%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 36.0 3.70e-01 80.8% 74.5%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.14e-01 96.2% 90.5%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 42.0 3.50e-01 100.0% 69.9%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 40.0 4.07e-01 84.6% 98.0%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.24e-01 100.0% 50.4%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.24e-01 98.1% 47.3%
2x3aA01 2.60.40.2970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 2.99e-01 82.7% 67.2%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 35.0 3.19e-01 88.5% 46.4%
5zl1A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 39.0 2.58e-01 94.2% 19.9%
3l4yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 34.0 2.98e-01 84.6% 38.8%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.32e-01 86.5% 53.4%
7xoiP01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 34.0 3.20e-01 82.7% 50.6%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 37.0 3.43e-01 82.7% 59.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583460 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.92 86.0 5.90e-01 100.0% 38.1%
1827785 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.92 85.0 5.56e-01 100.0% 30.6%
4028658 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.81 70.0 5.06e-01 100.0% 35.2%
3643370 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.64 46.0 3.37e-01 100.0% 26.5%
2142447 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 51.0 4.15e-01 100.0% 55.7%
3880720 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 50.0 4.11e-01 100.0% 59.1%
3978321 11.1.5.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Fimbrial 0.61 49.0 3.78e-01 100.0% 56.4%
3648571 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.59 50.0 3.88e-01 100.0% 87.7%
4249669 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 43.0 3.60e-01 80.8% 73.7%
3511254 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 43.0 3.66e-01 86.5% 51.0%
4666101 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 4.11e-01 73.1% 82.2%
3633497 11.1.1.1114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30909 0.57 44.0 3.31e-01 90.4% 66.0%
3628368 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.57 47.0 3.70e-01 100.0% 63.2%
3994700 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 43.0 3.75e-01 86.5% 56.8%
3622117 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.57 42.0 3.61e-01 88.5% 51.0%
3208090 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 3.20e-01 76.9% 98.2%
3216934 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.56 43.0 3.64e-01 90.4% 52.0%
4943677 12.1.1.119 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5110 0.56 39.0 3.33e-01 88.5% 41.0%
3969578 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.55 39.0 3.85e-01 78.8% 70.9%
3441684 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.55 39.0 3.89e-01 78.8% 100.0%
3520985 10.35.1.2 ↗ beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV 0.54 43.0 3.08e-01 100.0% 41.5%
1694 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 43.0 3.64e-01 92.3% 70.4%
3394081 10.32.1.195 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAAT-like 0.53 41.0 3.22e-01 100.0% 45.8%
2404978 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.53 37.0 3.19e-01 84.6% 41.2%
3598347 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 40.0 4.16e-01 82.7% 97.8%
4055012 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.53 42.0 3.94e-01 90.4% 89.2%
4933103 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.52 39.0 3.84e-01 86.5% 90.0%
4992429 375.12.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.52 38.0 3.13e-01 80.8% 41.0%
4154672 2003.1.4.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.52 34.0 2.31e-01 71.2% 81.4%
4024048 375.1.1.22 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.52 37.0 3.84e-01 84.6% 85.4%
4084473 375.1.1.8 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HypA 0.52 37.0 3.84e-01 82.7% 91.1%
3040112 375.1.1.22 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.52 35.0 3.59e-01 73.1% 76.0%
4217775 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.29e-01 98.1% 71.7%
4930203 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.51 40.0 3.96e-01 88.5% 92.7%
4999960 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.38e-01 100.0% 80.9%
4024469 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 39.0 3.16e-01 100.0% 51.1%
2096154 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.50 35.0 3.22e-01 86.5% 50.0%
3601859 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 40.0 3.76e-01 90.4% 98.5%
3253622 148.1.3.213 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind 0.50 38.0 2.64e-01 90.4% 78.6%
3882479 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.08e-01 94.2% 58.5%