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JN371769.1__AFD02945.1__X__00104

Bact-Vir

JN371769.1__AFD02945.1__X__00104

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-75
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_186_prodigal-single.1__X__X__00004__D1-56
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18454.8 best Mtd_N 55.2 7.20e-15 52.0% 100.0%
D2 medium residues 180-230
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jdmC01 6.20.30.20 Special › Other non-globular › Pemi-like Protein 1; Chain: D › 0.62 49.0 4.40e-01 92.2% 67.1%
D3 medium residues 238-283
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.72 47.0 3.01e-01 100.0% 16.1%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 44.0 3.10e-01 100.0% 20.9%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 44.0 2.70e-01 100.0% 11.4%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.70 44.0 3.74e-01 100.0% 40.0%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 43.0 3.26e-01 100.0% 27.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 44.0 2.58e-01 100.0% 9.2%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 40.0 2.92e-01 100.0% 22.0%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.63 40.0 3.59e-01 100.0% 45.5%
2wadA01 6.20.70.10 Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 39.0 4.21e-01 100.0% 93.3%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 40.0 3.11e-01 100.0% 30.0%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 40.0 3.17e-01 100.0% 29.9%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 39.0 3.03e-01 100.0% 28.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.19e-01 100.0% 30.7%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 41.0 3.37e-01 100.0% 35.9%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.59 39.0 2.70e-01 100.0% 20.5%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 42.0 3.21e-01 100.0% 34.0%
3a8kA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.57 39.0 3.31e-01 100.0% 38.6%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 43.0 3.78e-01 100.0% 55.9%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.56 45.0 3.43e-01 100.0% 83.5%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.38e-01 100.0% 10.5%
4cvhA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 33.0 2.13e-01 82.6% 11.2%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.54 42.0 3.53e-01 100.0% 50.0%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 43.0 3.24e-01 100.0% 75.5%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 2.83e-01 84.8% 69.3%
3vmnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 3.47e-01 100.0% 61.3%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 46.0 3.25e-01 100.0% 69.6%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.51e-01 100.0% 62.5%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 45.0 2.72e-01 100.0% 90.2%
3ia1B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 44.0 3.11e-01 100.0% 68.3%
4gqcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 40.0 2.93e-01 100.0% 66.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5020026 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.73 40.0 3.27e-01 100.0% 29.4%
3976197 241.13.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.71 44.0 3.28e-01 100.0% 25.2%
4218521 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.69 45.0 2.63e-01 100.0% 8.5%
4495021 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.69 43.0 2.53e-01 100.0% 8.2%
4116094 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.66 42.0 3.16e-01 100.0% 26.1%
3352777 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.65 46.0 5.12e-01 100.0% 97.1%
3582409 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.65 41.0 2.80e-01 100.0% 18.1%
5031053 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.63 43.0 3.57e-01 100.0% 41.2%
3713628 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 43.0 2.59e-01 76.1% 83.5%
3430159 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 39.0 3.48e-01 100.0% 44.1%
4516448 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 51.0 4.20e-01 100.0% 53.8%
3962011 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 41.0 2.93e-01 100.0% 25.7%
4112241 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 48.0 3.95e-01 100.0% 55.3%
223827 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.54 42.0 3.52e-01 100.0% 49.4%
4270966 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 45.0 3.83e-01 100.0% 56.0%
2094928 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 43.0 2.96e-01 89.1% 67.5%
4239277 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 47.0 3.68e-01 100.0% 56.0%
3862603 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.53 47.0 3.71e-01 100.0% 70.5%
3379506 243.3.1.62 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF26138 0.53 48.0 3.64e-01 100.0% 46.5%
3590676 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.52 41.0 3.33e-01 100.0% 97.3%
4134639 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 43.0 3.48e-01 100.0% 61.0%
4383797 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 46.0 3.57e-01 100.0% 60.0%
3599565 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 46.0 3.81e-01 100.0% 58.7%
4436975 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.50 43.0 2.74e-01 100.0% 93.5%
D4 medium residues 383-442
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y9wA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 34.0 2.82e-01 91.7% 33.7%
3lo7A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.56 32.0 2.63e-01 86.7% 28.4%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.56 27.0 2.27e-01 75.0% 26.3%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 32.0 2.70e-01 91.7% 33.3%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 33.0 2.25e-01 95.0% 16.7%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 2.85e-01 80.0% 54.6%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.70e-01 71.7% 88.8%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 35.0 2.53e-01 71.7% 28.4%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.74e-01 91.7% 82.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3559319 101.1.11.134 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Sarcoglycan_1 0.57 43.0 4.37e-01 100.0% 81.7%
3590950 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.55 49.0 3.63e-01 100.0% 50.3%