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JN371769.1__AFD02990.1__X__00149

Bact-Vir

JN371769.1__AFD02990.1__X__00149

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-92
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.62 48.0 3.20e-01 100.0% 19.3%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 42.0 3.14e-01 78.4% 88.3%
1kk1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.27e-01 100.0% 42.9%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 41.0 3.43e-01 80.4% 88.2%
3bt3A01 3.30.1900.10 Alpha Beta › 2-Layer Sandwich › glyoxalase-related enzyme like fold › glyoxalase-related enzyme like domain 0.56 46.0 4.26e-01 100.0% 83.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.55 40.0 2.65e-01 100.0% 19.0%
1n40A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 44.0 2.72e-01 100.0% 65.0%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.54 42.0 3.11e-01 86.3% 41.4%
4dzdA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.53 42.0 3.89e-01 92.2% 84.3%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 2.92e-01 100.0% 54.8%
2dulA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.53 40.0 3.86e-01 94.1% 74.6%
1twfB05 3.90.1070.20 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.53 37.0 3.31e-01 78.4% 95.1%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.99e-01 94.1% 90.5%
2mtvA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.52 36.0 2.66e-01 76.5% 57.7%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 38.0 3.36e-01 88.2% 72.2%
1xjhA00 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 39.0 3.79e-01 100.0% 74.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701386 7026.1.1.4 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.75 58.0 3.67e-01 88.2% 22.9%
5052848 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 63.0 4.27e-01 100.0% 30.5%
3423522 7026.1.1.4 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.71 54.0 3.43e-01 88.2% 22.5%
4016723 7026.1.1.4 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.69 53.0 3.37e-01 88.2% 21.7%
3584914 7026.1.1.4 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.67 50.0 2.94e-01 88.2% 12.9%
5037815 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.61 50.0 3.48e-01 100.0% 27.5%
5037412 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.57 48.0 3.52e-01 100.0% 31.9%
3421230 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.54 41.0 3.62e-01 90.2% 96.6%
3676076 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.54 41.0 2.97e-01 94.1% 69.7%
4180555 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.54 39.0 3.91e-01 94.1% 74.5%
3935684 101.1.2.532 ↗ alpha arrays › HTH › HTH › winged helix domain › FAM91_N, FAM91_C 0.53 44.0 2.84e-01 100.0% 32.5%
5070528 2004.1.1.164 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.52 44.0 3.08e-01 100.0% 33.0%
4366971 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 39.0 3.86e-01 98.0% 76.4%
4148130 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.51 38.0 3.75e-01 98.0% 76.4%
3599022 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 38.0 2.29e-01 92.2% 22.0%