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JN371769.1__AFD03013.1__X__00172

Bact-Vir

JN371769.1__AFD03013.1__X__00172

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-95
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.80 63.0 6.09e-01 83.6% 97.0%
6c80A03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.65 44.0 3.01e-01 72.1% 21.2%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.60 41.0 3.68e-01 72.1% 91.0%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.78e-01 82.0% 77.6%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 47.0 4.12e-01 100.0% 90.7%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.52 44.0 4.04e-01 96.7% 83.1%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.52 36.0 3.37e-01 93.4% 55.3%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 44.0 4.07e-01 100.0% 78.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
11143 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.90 85.0 5.03e-01 100.0% 16.3%
3705782 4357.1.1.8 ↗ beta barrels › WWE domain › WWE domain › WWE domain › XPB_C 0.60 49.0 4.16e-01 91.8% 97.1%
4299026 304.30.1.1 ↗ a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A 0.60 45.0 4.29e-01 85.2% 100.0%
3465504 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.60 37.0 4.00e-01 100.0% 76.0%
4957781 807.1.1.0 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) 0.59 43.0 4.60e-01 91.8% 96.0%
5040784 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.59 43.0 4.57e-01 98.4% 96.0%
4972013 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.57 45.0 4.15e-01 88.5% 88.7%
3270757 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 40.0 3.75e-01 82.0% 96.2%
4886584 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.53 40.0 3.90e-01 100.0% 74.3%
4030871 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.53 40.0 3.90e-01 100.0% 75.7%
5070676 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.52 43.0 3.80e-01 96.7% 84.2%
5016503 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.51 41.0 3.56e-01 96.7% 80.9%
3513551 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 42.0 3.93e-01 98.4% 88.7%