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JN371769.1__AFD03027.1__X__00186

Bact-Vir

JN371769.1__AFD03027.1__X__00186

Identity

Accession:
JN371769 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Galenevirus› Synechococcus_phage_metaG-MbCM1

TaxID: 1079999

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-74
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.74 57.0 4.63e-01 100.0% 44.5%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 51.0 4.29e-01 100.0% 53.2%
3b0bC02 6.10.130.30 Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › 0.61 38.0 4.37e-01 97.1% 100.0%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 39.0 3.62e-01 94.2% 52.2%
4axzA00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.59 38.0 2.71e-01 100.0% 21.1%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 2.79e-01 75.4% 22.6%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 40.0 4.13e-01 91.3% 76.9%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 46.0 4.06e-01 91.3% 82.6%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 4.10e-01 89.9% 79.7%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 41.0 4.15e-01 91.3% 80.6%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 40.0 4.04e-01 92.8% 79.1%
3mpxA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.55 45.0 3.37e-01 100.0% 61.2%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 45.0 4.32e-01 100.0% 85.1%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 43.0 3.56e-01 94.2% 63.3%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 45.0 4.29e-01 100.0% 100.0%
1h3mB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 38.0 2.78e-01 76.8% 77.1%
4uz0A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 36.0 3.41e-01 71.0% 57.5%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 45.0 3.80e-01 100.0% 63.5%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.74e-01 100.0% 65.5%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.53 41.0 4.01e-01 88.4% 76.6%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 43.0 3.61e-01 95.7% 86.4%
1khyD00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.53 36.0 2.96e-01 72.5% 96.4%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 41.0 3.42e-01 100.0% 48.5%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.51 34.0 3.70e-01 95.7% 94.1%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 40.0 2.64e-01 87.0% 21.0%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.50 36.0 3.55e-01 78.3% 81.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733 601.7.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › KNTase_C 0.74 56.0 4.60e-01 100.0% 44.5%
5057930 601.7.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › KNTase_C 0.74 56.0 4.69e-01 100.0% 47.5%
3871060 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.69 45.0 4.60e-01 100.0% 70.8%
4975992 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 50.0 4.58e-01 100.0% 66.3%
5026427 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.61 45.0 4.15e-01 100.0% 60.0%
4178636 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.60 45.0 3.57e-01 100.0% 38.0%
4953696 3843.1.1.37 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2109 0.60 41.0 3.95e-01 72.5% 82.5%
4959289 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.59 47.0 4.30e-01 89.9% 65.3%
4947212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 45.0 4.05e-01 94.2% 59.0%
4979047 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.14e-01 97.1% 30.9%
4976943 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 42.0 2.66e-01 100.0% 14.0%
57577 629.1.1.0 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) 0.57 45.0 3.54e-01 89.9% 41.5%
3618209 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.57 42.0 4.14e-01 84.1% 73.3%
3241686 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.57 45.0 3.55e-01 91.3% 76.2%
2722209 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.57 45.0 4.24e-01 91.3% 96.6%
3593791 3069.1.1.0 ↗ alpha arrays › BART › BART › BART 0.56 49.0 3.86e-01 97.1% 57.9%
3973441 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 47.0 4.41e-01 100.0% 81.1%
5009561 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.56 46.0 4.44e-01 98.6% 85.9%
3177211 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.54 33.0 3.11e-01 98.6% 48.2%
4001786 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.54 46.0 3.38e-01 100.0% 59.3%
3386136 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.54 44.0 4.34e-01 95.7% 85.3%
4357455 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.53 45.0 4.27e-01 100.0% 85.9%
168371 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.52 44.0 3.23e-01 98.6% 85.2%
4945170 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.52 42.0 3.19e-01 100.0% 78.6%
4602598 101.1.2.147 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.51 41.0 3.54e-01 100.0% 52.8%
4016806 101.1.10.60 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF2293 0.51 38.0 3.37e-01 81.2% 53.3%
3274841 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.51 40.0 3.28e-01 89.9% 88.6%
4976428 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.51 40.0 3.77e-01 87.0% 82.4%