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JN371769.1__AFD03040.1__X__00199
Bact-VirJN371769.1__AFD03040.1__X__00199
Identity
- Accession:
- JN371769 ↗
- Kingdom:
- phage
Quality
93.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Galenevirus›
Synechococcus_phage_metaG-MbCM1
TaxID: 1079999
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-94
Domain cluster:
rep: KY549443.1__APZ82050.1__EFP01_123__00123__D15-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03477.22 best | ATP-cone | 56.1 | 6.20e-15 | 100.0% | 97.7% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.73 | 51.0 | 5.88e-01 | 74.7% | 100.0% |
| 7qv0F01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.71 | 41.0 | 4.28e-01 | 79.3% | 61.7% |
| 4k90A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.68 | 62.0 | 4.79e-01 | 100.0% | 95.7% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 48.0 | 3.97e-01 | 74.7% | 80.7% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.66 | 60.0 | 5.06e-01 | 100.0% | 99.3% |
| 1f2eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 39.0 | 3.65e-01 | 94.3% | 49.1% |
| 3nqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.65 | 58.0 | 4.92e-01 | 100.0% | 96.6% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 47.0 | 5.02e-01 | 78.2% | 100.0% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.64 | 47.0 | 4.99e-01 | 96.6% | 93.2% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 42.0 | 3.66e-01 | 73.6% | 90.1% |
| 3rnrB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 54.0 | 4.09e-01 | 100.0% | 67.3% |
| 2m0rA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 41.0 | 3.92e-01 | 78.2% | 60.6% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 46.0 | 4.45e-01 | 83.9% | 75.2% |
| 2kxeA00 | 1.10.8.800 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain | 0.58 | 36.0 | 3.91e-01 | 71.3% | 75.0% |
| 3b34A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.57 | 50.0 | 4.11e-01 | 98.9% | 82.3% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.57 | 40.0 | 3.94e-01 | 80.5% | 68.5% |
| 5n13A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 48.0 | 4.53e-01 | 100.0% | 100.0% |
| 6cgvM01 | 1.20.120.1500 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa | 0.55 | 36.0 | 3.12e-01 | 86.2% | 43.3% |
| 2yogA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 3.13e-01 | 79.3% | 47.2% |
| 6vvoC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 37.0 | 3.69e-01 | 87.4% | 72.5% |
| 2ijeS00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.50 | 35.0 | 2.56e-01 | 72.4% | 40.5% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2791177 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.97 | 92.0 | 8.49e-01 | 100.0% | 81.1% |
| 1853272 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.97 | 93.0 | 8.82e-01 | 100.0% | 88.9% |
| 1878968 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.94 | 89.0 | 8.40e-01 | 100.0% | 86.0% |
| 4312875 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.93 | 88.0 | 8.56e-01 | 100.0% | 91.6% |
| 4257906 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.92 | 88.0 | 8.71e-01 | 100.0% | 96.7% |
| 3594048 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.91 | 87.0 | 8.58e-01 | 100.0% | 97.8% |
| 3486229 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.91 | 86.0 | 8.55e-01 | 100.0% | 97.8% |
| 3607359 | 103.2.1.1 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN | 0.91 | 73.0 | 5.35e-01 | 83.9% | 36.1% |
| 2320584 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.91 | 86.0 | 8.22e-01 | 100.0% | 90.7% |
| 3394718 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.90 | 62.0 | 7.17e-01 | 70.1% | 100.0% |
| 3784313 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.89 | 82.0 | 8.09e-01 | 100.0% | 95.6% |
| 5017312 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.88 | 75.0 | 7.83e-01 | 100.0% | 97.5% |
| 4143596 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.87 | 71.0 | 7.08e-01 | 86.2% | 93.3% |
| 4957090 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 83.0 | 7.99e-01 | 100.0% | 94.7% |
| 4954173 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 70.0 | 7.49e-01 | 95.4% | 98.7% |
| 4994194 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 69.0 | 7.37e-01 | 94.3% | 97.3% |
| 4961006 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 69.0 | 7.42e-01 | 95.4% | 98.7% |
| 4987113 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.85 | 70.0 | 7.47e-01 | 96.6% | 100.0% |
| 4485359 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.85 | 75.0 | 7.32e-01 | 96.6% | 86.3% |
| 5066162 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.85 | 80.0 | 7.58e-01 | 98.9% | 88.0% |
| 4942297 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.85 | 65.0 | 7.13e-01 | 89.7% | 98.6% |
| 4952141 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.84 | 70.0 | 7.26e-01 | 97.7% | 95.0% |
| 4987957 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.84 | 68.0 | 7.32e-01 | 97.7% | 100.0% |
| 5010578 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.83 | 74.0 | 7.35e-01 | 100.0% | 92.2% |
| 5058165 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.82 | 71.0 | 7.17e-01 | 100.0% | 94.1% |
| 4238441 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.82 | 71.0 | 7.37e-01 | 93.1% | 100.0% |
| 4466734 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 75.0 | 6.76e-01 | 100.0% | 74.8% |
| 5074671 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.81 | 70.0 | 7.09e-01 | 100.0% | 94.1% |
| 4948813 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 68.0 | 7.07e-01 | 100.0% | 97.5% |
| 4989754 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 68.0 | 7.07e-01 | 97.7% | 97.5% |
| 4160317 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 74.0 | 6.67e-01 | 100.0% | 74.8% |
| 4979817 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.80 | 61.0 | 6.35e-01 | 88.5% | 86.3% |
| 5001059 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.79 | 66.0 | 6.83e-01 | 97.7% | 97.5% |
| 4626373 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.78 | 71.0 | 6.63e-01 | 100.0% | 81.9% |
| 4956905 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.78 | 65.0 | 6.72e-01 | 97.7% | 97.5% |
| 4980139 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.77 | 70.0 | 6.65e-01 | 97.7% | 95.0% |
| 4507907 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.77 | 68.0 | 6.88e-01 | 98.9% | 97.6% |
| 4035675 | 103.7.1.2 ↗ | alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 | 0.76 | 60.0 | 6.22e-01 | 97.7% | 90.0% |
| 3597638 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.73 | 61.0 | 6.39e-01 | 98.9% | 100.0% |
| 3648390 | 103.2.1.3 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › PF28345 | 0.66 | 58.0 | 5.76e-01 | 98.9% | 93.3% |
| 2576189 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.65 | 52.0 | 3.76e-01 | 89.7% | 32.7% |
| 3784411 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.63 | 45.0 | 4.64e-01 | 73.6% | 92.5% |
| 3940560 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.60 | 46.0 | 4.42e-01 | 86.2% | 77.1% |
| 3596558 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.59 | 48.0 | 4.12e-01 | 94.3% | 74.8% |
| 3188177 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 44.0 | 3.30e-01 | 81.6% | 80.9% |
| 4927488 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.58 | 44.0 | 4.71e-01 | 94.3% | 98.6% |
| 4295608 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.56 | 43.0 | 4.27e-01 | 82.8% | 96.7% |
| 5062595 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.56 | 49.0 | 3.56e-01 | 100.0% | 67.3% |
| 3814902 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.55 | 39.0 | 4.09e-01 | 80.5% | 86.7% |
| 3857499 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.53 | 37.0 | 3.56e-01 | 71.3% | 70.0% |
| 3187211 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.52 | 35.0 | 3.20e-01 | 86.2% | 50.8% |
| 4954693 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 3.96e-01 | 86.2% | 83.2% |
D2
high
residues 103-185
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00317.27 best | Ribonuc_red_lgN | 28.7 | 1.50e-06 | 49.4% | 48.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gveB00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 37.0 | 2.57e-01 | 72.3% | 83.1% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.53 | 39.0 | 3.89e-01 | 100.0% | 74.4% |
| 1puoB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.53 | 40.0 | 3.43e-01 | 81.9% | 92.3% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.52 | 32.0 | 3.21e-01 | 98.8% | 58.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948801 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.98 | 94.0 | 7.94e-01 | 100.0% | 66.4% |
| 4573827 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.93 | 81.0 | 7.07e-01 | 100.0% | 65.2% |
| 3515890 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.89 | 84.0 | 7.16e-01 | 100.0% | 69.6% |
| 2791176 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.87 | 81.0 | 6.97e-01 | 100.0% | 66.9% |
| 3594035 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.87 | 81.0 | 6.83e-01 | 100.0% | 72.3% |
| 3966685 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.86 | 77.0 | 6.68e-01 | 100.0% | 65.8% |
| 4990405 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.83 | 69.0 | 6.24e-01 | 98.8% | 67.3% |
| 4365518 | 148.1.3.15 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_assoc_2 | 0.65 | 42.0 | 4.10e-01 | 100.0% | 58.9% |