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JN398369.1__AEL20155.1__RIDGECB_73__00073

Bact-Vir

JN398369.1__AEL20155.1__RIDGECB_73__00073

Identity

Accession:
JN398369 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fromanvirus› Mycobacterium_phage_RidgeCB

TaxID: 1071506

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 142-194
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24254.2 best DUF7455 33.0 4.40e-08 71.7% 59.3%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.62 39.0 4.28e-01 98.1% 94.3%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 40.0 3.33e-01 71.7% 76.9%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 49.0 3.75e-01 100.0% 40.3%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.57 32.0 2.91e-01 100.0% 35.6%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 44.0 3.74e-01 90.6% 82.1%
3d03A01 3.60.21.40 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › GpdQ, catalytic alpha/beta sandwich domain 0.54 38.0 2.95e-01 75.5% 93.1%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.06e-01 88.7% 27.3%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.17e-01 100.0% 82.3%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 2.63e-01 90.6% 61.3%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.53 31.0 3.04e-01 83.0% 42.1%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.09e-01 96.2% 63.7%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.53 32.0 2.33e-01 77.4% 21.4%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 3.03e-01 98.1% 84.9%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.52 33.0 3.56e-01 100.0% 78.0%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 39.0 3.03e-01 86.8% 69.4%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 35.0 3.16e-01 100.0% 48.1%
1s7mA03 2.20.25.140 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 29.0 3.26e-01 75.5% 78.6%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.51 35.0 2.44e-01 71.7% 59.0%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 3.01e-01 100.0% 84.9%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.50 35.0 3.59e-01 100.0% 82.4%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 40.0 2.62e-01 92.5% 78.9%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 30.0 3.23e-01 100.0% 67.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3411686 3136.1.1.1 ↗ extended segments › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Nup98_GLEBS 0.73 39.0 3.75e-01 90.6% 45.0%
3207096 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.67 40.0 2.61e-01 90.6% 13.5%
3187032 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.67 39.0 2.63e-01 88.7% 15.1%
3602563 2007.1.5.14 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › PF27247 0.65 52.0 4.04e-01 90.6% 96.8%
5027304 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.65 38.0 2.67e-01 90.6% 17.1%
3735615 3670.1.1.2 ↗ alpha complex topology › NCD2 domain › NCD2 domain › NCD2 domain › PF26087 0.64 35.0 2.81e-01 98.1% 24.0%
3592595 3926.1.1.0 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.63 38.0 2.47e-01 88.7% 13.5%
5000798 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.61 35.0 2.43e-01 94.3% 14.6%
3225764 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.61 33.0 3.21e-01 77.4% 40.0%
3038102 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.60 33.0 3.25e-01 83.0% 42.9%
3442139 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.59 43.0 2.86e-01 83.0% 45.9%
4933528 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.58 35.0 2.38e-01 88.7% 13.8%
5026457 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.58 41.0 2.86e-01 79.2% 41.3%
3365774 109.4.1.1560 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, E_motif 0.58 41.0 2.58e-01 81.1% 33.0%
3253805 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 44.0 3.02e-01 92.5% 38.2%
4943172 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.57 34.0 2.33e-01 88.7% 14.5%
3494392 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.56 47.0 2.89e-01 100.0% 48.6%
3588700 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 31.0 2.77e-01 83.0% 31.2%
5062792 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.56 33.0 3.02e-01 77.4% 38.7%
4943443 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.54 41.0 2.80e-01 90.6% 72.4%
3517167 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 45.0 2.76e-01 100.0% 48.1%
4987444 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.54 38.0 2.61e-01 100.0% 19.7%
347023 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.53 44.0 3.13e-01 100.0% 81.7%
1282166 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 31.0 2.99e-01 83.0% 40.0%
5048560 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.53 40.0 2.95e-01 90.6% 86.1%
3989498 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 33.0 3.02e-01 100.0% 44.6%
4990821 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.52 40.0 2.61e-01 88.7% 25.1%
3373362 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 38.0 2.22e-01 83.0% 18.5%
3927041 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.52 43.0 3.27e-01 94.3% 86.9%
5004023 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.52 41.0 3.02e-01 100.0% 86.1%
4973288 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 30.0 2.98e-01 84.9% 47.3%
3789255 3082.1.1.0 ↗ extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 0.51 36.0 2.35e-01 83.0% 54.4%
4966168 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 2.48e-01 92.5% 76.8%
4949473 5086.1.1.230 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ATP-synt_D 0.51 36.0 2.50e-01 79.2% 44.4%
4980377 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.51 36.0 2.54e-01 79.2% 42.4%
3962429 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.50 34.0 2.75e-01 88.7% 32.5%
3440138 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.50 30.0 2.72e-01 100.0% 31.2%
3326759 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.50 37.0 3.45e-01 86.8% 88.0%
D2 medium residues 3-34
PDB
D3 medium residues 49-78
PDB
Domain cluster: representative
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.86 72.0 4.09e-01 100.0% 11.6%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.80 65.0 3.72e-01 100.0% 9.8%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.79 64.0 4.87e-01 100.0% 44.2%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 60.0 3.80e-01 100.0% 17.4%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.77 62.0 3.51e-01 100.0% 9.1%
3nsjA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.76 61.0 4.12e-01 100.0% 48.4%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.75 54.0 4.02e-01 100.0% 30.4%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.75 61.0 4.22e-01 100.0% 29.5%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.75 60.0 4.31e-01 100.0% 38.9%
1tfeA01 3.30.479.20 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain 0.74 60.0 4.29e-01 100.0% 91.8%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.73 57.0 3.78e-01 100.0% 45.5%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.72 59.0 4.11e-01 100.0% 69.6%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.72 56.0 3.73e-01 100.0% 25.0%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.71 55.0 3.80e-01 100.0% 55.6%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 56.0 3.92e-01 100.0% 26.6%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 55.0 3.99e-01 100.0% 29.8%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.69 56.0 3.55e-01 100.0% 20.1%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.68 51.0 3.58e-01 100.0% 57.9%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.68 50.0 3.94e-01 100.0% 36.3%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.68 53.0 3.68e-01 100.0% 28.9%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.68 53.0 3.06e-01 100.0% 9.2%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 49.0 3.63e-01 100.0% 27.2%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 52.0 3.53e-01 100.0% 29.9%
4at7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 50.0 3.13e-01 100.0% 14.7%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 51.0 3.93e-01 100.0% 34.5%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.66 51.0 2.97e-01 100.0% 9.3%
3lafA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 50.0 3.70e-01 100.0% 61.4%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.65 51.0 3.18e-01 100.0% 17.7%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 48.0 3.91e-01 96.7% 39.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 49.0 3.39e-01 100.0% 22.1%
4ab7H02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 53.0 3.49e-01 100.0% 19.1%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 48.0 3.59e-01 100.0% 29.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 51.0 3.03e-01 100.0% 13.5%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.63 43.0 3.34e-01 93.3% 33.3%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.62 49.0 4.58e-01 100.0% 70.5%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 46.0 3.51e-01 100.0% 30.9%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 47.0 2.75e-01 100.0% 8.9%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 47.0 3.53e-01 100.0% 31.9%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 3.72e-01 100.0% 93.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.10e-01 100.0% 24.0%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 3.42e-01 93.3% 51.0%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 44.0 3.17e-01 100.0% 27.1%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.59 43.0 3.21e-01 100.0% 27.4%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 44.0 2.82e-01 100.0% 40.4%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 42.0 3.77e-01 100.0% 55.9%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.57e-01 100.0% 9.4%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 40.0 3.81e-01 100.0% 58.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 41.0 2.86e-01 100.0% 18.8%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.57 43.0 4.03e-01 100.0% 63.0%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.39e-01 100.0% 55.9%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.57 41.0 2.68e-01 100.0% 58.2%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.56 39.0 2.39e-01 100.0% 9.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.03e-01 96.7% 36.0%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 41.0 2.62e-01 100.0% 28.6%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 37.0 2.95e-01 100.0% 27.8%
1rp5A01 2.20.70.70 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 38.0 3.87e-01 100.0% 88.9%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 42.0 2.44e-01 100.0% 10.8%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 42.0 2.54e-01 96.7% 12.0%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.02e-01 100.0% 43.3%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 38.0 3.04e-01 100.0% 62.1%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 38.0 2.83e-01 96.7% 25.0%
4g65A04 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.53 39.0 3.07e-01 100.0% 79.1%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 36.0 3.62e-01 100.0% 73.8%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 37.0 3.19e-01 100.0% 44.8%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591336 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.89 75.0 5.02e-01 100.0% 26.1%
3439608 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.88 72.0 4.01e-01 100.0% 7.7%
3497556 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.86 71.0 3.95e-01 100.0% 7.4%
4144852 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.84 71.0 4.82e-01 100.0% 29.6%
None — 0.82 67.0 3.83e-01 100.0% 9.7%
3185161 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.81 69.0 3.91e-01 100.0% 12.3%
3615641 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.81 68.0 4.97e-01 100.0% 37.6%
3683659 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.81 66.0 3.79e-01 100.0% 9.5%
3712990 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.81 62.0 4.89e-01 100.0% 40.0%
4312097 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.80 67.0 4.13e-01 100.0% 18.3%
5055952 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.80 59.0 3.34e-01 100.0% 7.5%
3609520 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 63.0 4.53e-01 100.0% 31.6%
3517016 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.77 64.0 3.66e-01 100.0% 9.3%
3592154 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 62.0 4.51e-01 100.0% 31.6%
3613468 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.76 58.0 4.71e-01 100.0% 43.1%
5022543 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.76 60.0 3.29e-01 100.0% 5.7%
3262383 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.75 61.0 4.04e-01 100.0% 23.7%
3478161 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 56.0 3.80e-01 100.0% 21.5%
3410709 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.74 58.0 3.62e-01 100.0% 45.3%
3705541 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 60.0 4.26e-01 100.0% 30.0%
3977405 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.73 58.0 4.18e-01 100.0% 32.0%
3275207 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.73 58.0 3.76e-01 100.0% 20.0%
4473494 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 52.0 3.07e-01 93.3% 10.2%
2387792 1205.1.1.0 ↗ a+b two layers › C-terminal domain of CdiA toxin 0.72 56.0 4.39e-01 100.0% 38.7%
3668393 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.72 56.0 4.58e-01 96.7% 83.1%
4410540 3321.1.1.1 ↗ a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.71 57.0 4.27e-01 100.0% 34.1%
3975793 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.71 57.0 4.17e-01 100.0% 31.6%
3721570 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.71 54.0 3.86e-01 100.0% 27.3%
3407532 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.70 55.0 4.90e-01 100.0% 64.0%
3397928 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 54.0 3.68e-01 100.0% 23.2%
4077485 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.69 54.0 4.45e-01 100.0% 46.2%
3414142 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.69 51.0 3.38e-01 100.0% 17.6%
3989857 706.2.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.69 54.0 3.57e-01 100.0% 20.7%
3056306 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.68 53.0 3.06e-01 100.0% 10.1%
4606763 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.67 49.0 3.41e-01 100.0% 22.5%
5057420 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 56.0 3.23e-01 100.0% 10.7%
3492079 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 54.0 3.91e-01 100.0% 30.9%
4033759 298.3.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter 0.67 54.0 3.61e-01 100.0% 23.7%
3216933 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.67 50.0 3.78e-01 100.0% 31.6%
3828973 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.67 52.0 4.30e-01 100.0% 84.6%
3926450 2004.1.1.230 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like 0.67 49.0 3.15e-01 100.0% 15.9%
4937819 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.67 49.0 3.36e-01 100.0% 21.6%
3804385 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 4.28e-01 100.0% 53.3%
5075211 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.66 51.0 4.59e-01 100.0% 64.0%
3427431 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 52.0 5.26e-01 100.0% 96.7%
3895924 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.65 52.0 3.44e-01 100.0% 29.7%
3813642 1.1.1.9 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.65 52.0 3.14e-01 100.0% 34.6%
853 9.1.1.23 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.65 49.0 3.39e-01 100.0% 22.0%
3837276 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.65 51.0 4.20e-01 100.0% 89.2%
1106759 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.65 51.0 3.76e-01 100.0% 31.2%
3279818 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 49.0 3.29e-01 100.0% 20.1%
3169657 4099.1.1.47 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 0.64 52.0 3.64e-01 100.0% 27.0%
3266673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.04e-01 100.0% 8.8%
5036655 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 4.16e-01 100.0% 48.3%
3989850 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 47.0 3.55e-01 100.0% 29.0%
3635131 220.1.1.129 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Swc3 0.63 48.0 3.12e-01 96.7% 16.9%
3942756 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.63 47.0 2.71e-01 100.0% 7.9%
4951189 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.63 47.0 4.28e-01 100.0% 64.0%
4976230 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.45e-01 100.0% 27.3%
4987602 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.62 45.0 3.19e-01 100.0% 22.4%
4961179 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.62 47.0 4.29e-01 100.0% 64.0%
3439990 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 47.0 3.54e-01 100.0% 32.2%
3218417 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 3.54e-01 100.0% 35.3%
4981192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 43.0 2.57e-01 80.0% 11.4%
3495598 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 42.0 2.98e-01 100.0% 20.0%
4992542 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.60 43.0 3.85e-01 100.0% 49.1%
3629460 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 45.0 2.72e-01 100.0% 10.9%
3371022 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.57 41.0 2.57e-01 100.0% 12.9%
3510133 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 45.0 2.92e-01 100.0% 17.6%
5036769 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.04e-01 100.0% 80.0%
3518993 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 43.0 4.27e-01 100.0% 85.7%
3983195 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.55 36.0 3.63e-01 100.0% 68.9%
3337748 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.54 40.0 3.42e-01 100.0% 47.7%
4942683 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.87e-01 93.3% 85.7%
3315074 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.53 39.0 3.80e-01 100.0% 75.0%
3214386 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 32.0 3.32e-01 100.0% 66.0%
3595091 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.51 34.0 2.32e-01 100.0% 14.2%
3407322 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 40.0 3.01e-01 100.0% 29.0%