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JN585957.1__AEY69651.1__PEp14_00062__00062

Bact-Vir

JN585957.1__AEY69651.1__PEp14_00062__00062

Identity

Accession:
JN585957 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pavtokvirus› Erwinia_phage_PEp14

TaxID: 1131315

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-188
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 52.0 6.07e-01 100.0% 98.1%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 5.37e-01 100.0% 83.5%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.74e-01 100.0% 80.8%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.89e-01 100.0% 93.0%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 4.11e-01 83.1% 94.6%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 2.95e-01 74.0% 66.7%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 34.0 2.85e-01 71.4% 36.1%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 41.0 3.46e-01 89.6% 59.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4251253 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 40.0 3.68e-01 100.0% 46.7%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.62 48.0 4.78e-01 100.0% 80.0%
3425872 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 53.0 5.02e-01 98.7% 80.0%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 37.0 4.27e-01 100.0% 87.3%
3427136 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.30e-01 98.7% 80.0%
4018760 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 39.0 4.03e-01 76.6% 73.3%
3459303 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.55 49.0 4.54e-01 98.7% 82.0%
3352682 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 32.0 3.37e-01 92.2% 62.9%
3574358 220.1.1.18 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.54 42.0 3.86e-01 87.0% 89.5%
3598298 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.60e-01 90.9% 85.0%
3706730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 46.0 4.58e-01 100.0% 95.0%
3242923 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 42.0 3.59e-01 93.5% 85.4%
D2 medium residues 1-102
PDB
Domain cluster: rep: NC_047947.1__YP_009799816.1__HOT01_gp62__00062__D1-97
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.59e-01 71.6% 79.8%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 4.34e-01 73.5% 99.1%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.93e-01 73.5% 99.3%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 4.18e-01 70.6% 88.2%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.60 37.0 4.34e-01 70.6% 89.9%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 4.01e-01 72.5% 100.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.95e-01 72.5% 94.4%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.60 43.0 2.81e-01 74.5% 97.6%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 4.19e-01 71.6% 98.1%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.76e-01 72.5% 83.2%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.21e-01 76.5% 97.2%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.58 47.0 3.81e-01 90.2% 100.0%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.90e-01 72.5% 98.3%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 35.0 3.67e-01 73.5% 65.6%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.49e-01 71.6% 60.8%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 4.29e-01 82.4% 93.9%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 4.04e-01 72.5% 99.0%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.91e-01 71.6% 93.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.83e-01 70.6% 89.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 39.0 3.19e-01 71.6% 43.6%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.54 38.0 3.72e-01 71.6% 94.6%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 39.0 3.43e-01 76.5% 82.3%
2moqA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.38e-01 72.5% 85.1%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.78e-01 76.5% 100.0%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.53 38.0 3.33e-01 74.5% 98.7%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 3.12e-01 71.6% 79.3%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 3.49e-01 83.3% 71.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.51 36.0 3.62e-01 72.5% 91.1%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 3.28e-01 71.6% 99.2%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 3.18e-01 71.6% 94.3%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 34.0 3.21e-01 71.6% 97.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501905 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 4.48e-01 73.5% 93.0%
3513739 220.1.1.60 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.62 43.0 3.67e-01 72.5% 73.9%
3492949 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 44.0 3.97e-01 74.5% 92.9%
3773782 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 44.0 3.47e-01 75.5% 49.8%
3479736 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.22e-01 72.5% 95.4%
3849761 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 44.0 3.09e-01 75.5% 32.9%
3472726 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.61 43.0 4.03e-01 73.5% 84.0%
3882494 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 44.0 4.25e-01 75.5% 93.0%
3860034 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 4.10e-01 75.5% 94.2%
3630433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.95e-01 71.6% 100.0%
4027068 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 4.12e-01 74.5% 94.5%
3876167 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 41.0 3.44e-01 72.5% 61.7%
3593933 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.59e-01 71.6% 91.3%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.58 41.0 4.14e-01 72.5% 99.0%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.58 40.0 3.96e-01 71.6% 88.2%
4099186 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.57 39.0 3.22e-01 70.6% 44.2%
3408236 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 41.0 3.86e-01 74.5% 82.4%
3252797 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.90e-01 71.6% 100.0%
3258602 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 3.93e-01 76.5% 88.0%
3489979 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.23e-01 73.5% 52.7%
3621943 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 4.08e-01 82.4% 87.7%
3481296 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.81e-01 76.5% 83.8%
3889522 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 41.0 3.93e-01 76.5% 90.0%
3571958 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.56 39.0 3.78e-01 72.5% 89.6%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.56 39.0 3.19e-01 71.6% 43.6%
3225781 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.54 41.0 3.61e-01 82.4% 98.2%
3408641 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 40.0 3.73e-01 77.5% 93.1%
3823929 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.53 40.0 3.83e-01 80.4% 90.8%
3254760 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.53 41.0 3.95e-01 87.3% 89.6%
3859879 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.59e-01 76.5% 89.2%
4971791 10.17.1.1 ↗ beta sandwiches › jelly-roll › Acetamidase/Formamidase-like › Acetamidase/Formamidase-like › FmdA_AmdA 0.52 37.0 2.85e-01 73.5% 58.7%
3237575 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 37.0 2.74e-01 79.4% 27.9%
3879656 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 33.0 2.75e-01 81.4% 36.2%