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JN627160.1__AEV89567.1__OBP_130__00130

Bact-Vir

JN627160.1__AEV89567.1__OBP_130__00130

Identity

Accession:
JN627160 ↗
Kingdom:
phage

Quality

42.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Petsuvirus› Pseudomonas_phage_OBP

TaxID: 1124849

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 130-195
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.04e-01 74.2% 77.3%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.09e-01 95.5% 68.8%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 53.0 4.01e-01 97.0% 97.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 52.0 4.25e-01 93.9% 57.9%
1baa001 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 54.0 3.98e-01 100.0% 94.1%
2j3vA02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.61 55.0 3.80e-01 98.5% 80.2%
6v88A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.60 51.0 4.35e-01 100.0% 74.1%
1dliA03 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 44.0 3.99e-01 80.3% 95.6%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 40.0 3.18e-01 77.3% 48.4%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.56 41.0 3.98e-01 87.9% 71.1%
3kzqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.24e-01 92.4% 72.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.54 36.0 3.68e-01 87.9% 70.3%
5t3wA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 43.0 3.52e-01 93.9% 45.3%
2khoA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 37.0 2.86e-01 74.2% 80.5%
4dcmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.41e-01 98.5% 48.9%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 36.0 3.52e-01 81.8% 67.1%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 37.0 3.26e-01 80.3% 87.2%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 40.0 3.37e-01 93.9% 47.0%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.29e-01 78.8% 89.8%
4giwB00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.50 38.0 3.00e-01 89.4% 67.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3800383 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.47e-01 75.8% 78.5%
3406014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 52.0 5.29e-01 75.8% 78.5%
3641172 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.70 52.0 4.76e-01 81.8% 77.8%
5048987 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 5.21e-01 83.3% 94.4%
3676556 101.1.1.250 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 0.67 48.0 4.74e-01 75.8% 71.4%
4407721 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.66 53.0 4.06e-01 89.4% 45.2%
3210665 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.66 49.0 3.34e-01 80.3% 57.9%
3686518 101.1.2.384 ↗ alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.62 47.0 4.98e-01 83.3% 100.0%
3924926 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.62 53.0 4.73e-01 100.0% 75.0%
1046270 3716.1.1.1 ↗ alpha arrays › DUF3349 › DUF3349 › DUF3349 › DUF3349 0.62 49.0 4.21e-01 90.9% 53.6%
3227458 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 44.0 4.58e-01 81.8% 93.3%
2073547 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.59 42.0 4.27e-01 77.3% 86.2%
4975746 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.53 38.0 3.97e-01 77.3% 100.0%
3339002 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.53 39.0 3.75e-01 81.8% 69.3%
3837935 4973.1.1.0 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.52 38.0 3.92e-01 78.8% 88.3%