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JN627160.1__AEV89606.1__OBP_169__00169

Bact-Vir

JN627160.1__AEV89606.1__OBP_169__00169

Identity

Accession:
JN627160 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 79-173
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 32.0 3.43e-01 77.9% 70.5%
D2 medium residues 1-76
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.44e-01 72.4% 92.5%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.71 53.0 4.84e-01 80.3% 94.1%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.76e-01 73.7% 100.0%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 46.0 3.57e-01 71.1% 59.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.09e-01 80.3% 87.7%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.37e-01 85.5% 100.0%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 46.0 3.88e-01 73.7% 52.7%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.17e-01 84.2% 95.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 5.15e-01 84.2% 92.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.42e-01 86.8% 100.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 5.07e-01 76.3% 96.8%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.05e-01 82.9% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.87e-01 88.2% 89.4%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 44.0 3.74e-01 76.3% 97.8%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 44.0 4.11e-01 75.0% 96.9%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.68e-01 93.4% 90.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.84e-01 78.9% 98.2%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 5.05e-01 81.6% 100.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 47.0 4.24e-01 84.2% 84.4%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 44.0 3.27e-01 76.3% 98.5%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 5.08e-01 84.2% 100.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.81e-01 81.6% 70.1%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 3.86e-01 73.7% 95.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.55e-01 93.4% 89.8%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.27e-01 94.7% 79.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.77e-01 88.2% 91.6%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.81e-01 85.5% 96.0%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.60 43.0 4.10e-01 76.3% 96.7%
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.59 49.0 4.08e-01 92.1% 63.2%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.60e-01 82.9% 92.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.37e-01 73.7% 92.2%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 43.0 3.91e-01 82.9% 96.4%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.74e-01 84.2% 96.9%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.56 45.0 3.51e-01 90.8% 74.2%
1a7hA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.56 45.0 4.37e-01 92.1% 87.2%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.59e-01 94.7% 79.2%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 43.0 3.88e-01 82.9% 76.5%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.55 42.0 4.05e-01 84.2% 100.0%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 44.0 3.94e-01 90.8% 84.6%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 37.0 3.64e-01 80.3% 62.4%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.55e-01 90.8% 58.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 38.0 3.88e-01 72.4% 100.0%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.79e-01 100.0% 80.3%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.78e-01 90.8% 73.8%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.36e-01 82.9% 100.0%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 41.0 3.87e-01 82.9% 95.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 41.0 3.96e-01 85.5% 71.4%
3hz2A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.54 43.0 4.23e-01 90.8% 85.7%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 40.0 3.84e-01 80.3% 95.5%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 3.89e-01 100.0% 73.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 40.0 3.73e-01 82.9% 92.1%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 36.0 3.23e-01 71.1% 61.7%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.15e-01 81.6% 75.0%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.80e-01 90.8% 67.7%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.68e-01 89.5% 67.3%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 38.0 3.38e-01 81.6% 81.2%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 38.0 2.41e-01 82.9% 88.4%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 40.0 3.16e-01 90.8% 62.1%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 36.0 3.06e-01 75.0% 60.2%
5hp5A01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.50 39.0 3.41e-01 89.5% 57.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3514191 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.19e-01 82.9% 75.0%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 53.0 5.27e-01 78.9% 97.5%
5010546 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 49.0 4.30e-01 72.4% 70.0%
3743525 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 52.0 4.71e-01 80.3% 100.0%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 48.0 4.72e-01 72.4% 90.0%
3517377 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 51.0 4.98e-01 80.3% 83.5%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 53.0 5.18e-01 84.2% 97.6%
5010031 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 48.0 4.20e-01 75.0% 71.3%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.32e-01 78.9% 63.5%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.63 45.0 4.87e-01 82.9% 87.7%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 3.90e-01 71.1% 71.4%
3228278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.82e-01 84.2% 89.2%
4218142 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 50.0 4.57e-01 92.1% 66.0%
3593222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.74e-01 84.2% 100.0%
1680145 219.1.1.43 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.61 46.0 3.22e-01 81.6% 37.5%
3684460 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 51.0 4.76e-01 90.8% 98.9%
4373113 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 43.0 3.88e-01 73.7% 94.3%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 53.0 5.09e-01 93.4% 83.5%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.39e-01 92.1% 58.3%
3756428 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.61 49.0 4.50e-01 88.2% 87.0%
3427234 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 48.0 3.38e-01 85.5% 55.1%
3291549 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 43.0 3.92e-01 76.3% 95.2%
3229356 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.43e-01 90.8% 93.3%
3825252 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.81e-01 93.4% 91.1%
4223333 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 46.0 4.16e-01 84.2% 100.0%
3927391 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.59 49.0 4.39e-01 89.5% 79.6%
5028091 3127.1.1.1 beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.59 48.0 4.49e-01 89.5% 81.1%
4197746 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 41.0 4.03e-01 75.0% 89.4%
3860541 72.1.1.1 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › Crystall 0.59 49.0 4.82e-01 96.1% 85.9%
3243143 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.92e-01 89.5% 100.0%
3212402 10.32.1.37 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin 0.58 42.0 3.33e-01 80.3% 97.1%
4207197 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 43.0 4.00e-01 81.6% 100.0%
4197108 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 44.0 4.17e-01 82.9% 84.4%
3226649 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 46.0 3.44e-01 89.5% 88.0%
158849 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 40.0 3.52e-01 73.7% 80.8%
5056460 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 42.0 4.27e-01 78.9% 97.3%
3953766 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 38.0 2.95e-01 72.4% 84.9%
4132165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 43.0 3.93e-01 85.5% 95.2%
3617425 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.55 39.0 3.61e-01 73.7% 83.2%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 41.0 4.25e-01 82.9% 87.1%
3609787 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 43.0 3.66e-01 88.2% 65.2%
3277790 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 40.0 3.70e-01 81.6% 100.0%
3924218 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 44.0 3.91e-01 90.8% 86.1%
3532264 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 40.0 3.19e-01 78.9% 41.9%
3227155 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 41.0 3.67e-01 86.8% 88.7%
3916871 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 41.0 3.41e-01 89.5% 49.0%
3260357 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.59e-01 80.3% 91.6%
3779679 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 41.0 2.78e-01 89.5% 33.3%
3480666 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.38e-01 90.8% 74.3%
3231483 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 41.0 3.22e-01 93.4% 77.8%
3384106 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 41.0 3.15e-01 90.8% 91.9%
D3 medium residues 189-257
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 38.0 3.41e-01 79.7% 80.6%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.51 35.0 2.98e-01 71.0% 90.7%
2kxeA00 1.10.8.800 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain 0.51 40.0 4.04e-01 100.0% 88.9%
D4 medium residues 258-318
PDB