Back to structures

JN638751.1__AEO93296.1__G_25__00025

Bact-Vir

JN638751.1__AEO93296.1__G_25__00025

Identity

Accession:
JN638751 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-116
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09682.16 best Phage_holin_6_1 36.5 7.80e-09 85.0% 63.7%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 54.0 4.07e-01 91.3% 33.3%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 54.0 4.79e-01 86.3% 57.1%
1nlxA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.71 58.0 5.27e-01 86.3% 99.0%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.71 62.0 5.91e-01 100.0% 83.0%
3ig4A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.70 63.0 4.41e-01 100.0% 97.6%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.69 54.0 5.01e-01 83.7% 85.3%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.67 45.0 4.28e-01 90.0% 58.5%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 46.0 3.89e-01 85.0% 41.6%
3dd7C00 1.20.120.1870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain 0.67 49.0 4.25e-01 76.2% 51.6%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.66 54.0 5.22e-01 96.2% 80.4%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 52.0 4.38e-01 87.5% 53.6%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.65 45.0 4.62e-01 72.5% 84.8%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 45.0 4.65e-01 72.5% 89.0%
3s6bA01 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.64 57.0 3.94e-01 98.8% 96.6%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 47.0 4.69e-01 78.8% 79.5%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.63 52.0 4.36e-01 92.5% 52.5%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.62 53.0 4.29e-01 96.2% 86.9%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.62 42.0 3.43e-01 70.0% 75.2%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 52.0 4.36e-01 95.0% 58.0%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 45.0 4.55e-01 76.2% 85.9%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.61 47.0 3.92e-01 83.7% 48.3%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 47.0 4.68e-01 85.0% 78.8%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 45.0 4.66e-01 78.8% 84.0%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.61 44.0 3.89e-01 78.8% 56.9%
2np3A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 49.0 4.09e-01 91.3% 54.9%
4od4A01 1.10.357.140 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase 0.59 45.0 3.64e-01 81.2% 67.9%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 52.0 3.80e-01 98.8% 69.9%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 40.0 4.03e-01 71.2% 89.9%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.57 46.0 3.25e-01 90.0% 88.9%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 43.0 4.04e-01 81.2% 88.0%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 44.0 3.73e-01 88.7% 55.0%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 49.0 3.94e-01 98.8% 80.5%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 3.92e-01 97.5% 51.0%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 3.14e-01 93.8% 74.3%
4eadA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.56 45.0 3.30e-01 90.0% 93.0%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 3.79e-01 97.5% 50.7%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 3.90e-01 93.8% 56.4%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 3.76e-01 93.8% 56.3%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 3.75e-01 91.3% 54.0%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 39.0 2.93e-01 75.0% 33.1%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.55e-01 88.7% 52.9%
2jaqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.59e-01 100.0% 70.4%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.53 38.0 3.97e-01 78.8% 89.0%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.61e-01 93.8% 51.9%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.80e-01 91.3% 62.5%
4d2dA00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 45.0 2.83e-01 97.5% 37.8%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 3.63e-01 98.8% 51.0%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 42.0 3.66e-01 90.0% 57.3%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.52 43.0 3.43e-01 96.2% 98.3%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 46.0 3.92e-01 98.8% 69.5%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 41.0 3.50e-01 92.5% 58.9%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.51e-01 93.8% 59.6%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.50 38.0 3.19e-01 85.0% 64.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082325 3705.1.1.3 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.92 75.0 7.98e-01 85.0% 100.0%
3643885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.76e-01 88.7% 100.0%
4527910 601.17.1.1 alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen › Pollen_allerg_2 0.77 55.0 4.60e-01 75.0% 51.1%
4220501 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 64.0 6.00e-01 90.0% 84.2%
3738479 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.76 38.0 3.77e-01 71.2% 47.1%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.75 56.0 5.68e-01 88.7% 80.0%
3984604 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.75 61.0 5.79e-01 88.7% 86.3%
4071682 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.74 64.0 4.88e-01 95.0% 74.1%
3400463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 55.0 5.21e-01 78.8% 75.8%
4479128 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.73 66.0 4.98e-01 98.8% 96.2%
4232234 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.73 65.0 4.89e-01 98.8% 93.2%
5000432 101.1.17.1 alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.73 55.0 5.35e-01 81.2% 80.0%
4589278 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.72 62.0 5.64e-01 93.8% 77.1%
4325095 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.72 65.0 4.74e-01 100.0% 86.5%
3876674 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 58.0 5.66e-01 88.7% 97.8%
3742639 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.71 59.0 4.75e-01 90.0% 56.7%
3507992 566.1.1.0 alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related 0.70 54.0 3.63e-01 96.2% 20.6%
3353701 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.69 58.0 5.39e-01 92.5% 90.0%
3627307 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.69 53.0 4.06e-01 86.3% 36.1%
5027755 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.74e-01 90.0% 87.5%
4392375 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 56.0 5.09e-01 90.0% 77.3%
4927740 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 48.0 4.10e-01 83.7% 45.4%
4937761 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.68 56.0 3.37e-01 91.3% 23.0%
3470890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.45e-01 100.0% 96.2%
4035852 4954.1.1.1 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.67 53.0 3.74e-01 86.3% 56.5%
3269341 101.1.10.22 alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.67 44.0 4.26e-01 82.5% 60.0%
3276654 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.67 58.0 3.92e-01 96.2% 26.8%
3535212 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.66 58.0 5.59e-01 96.2% 100.0%
5067753 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.66 59.0 4.18e-01 100.0% 64.5%
4933807 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.45e-01 91.3% 92.9%
3476112 109.23.1.5 alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › EMC6 0.66 59.0 5.71e-01 100.0% 98.9%
3396670 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.66 54.0 5.14e-01 91.3% 93.7%
3958919 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.35e-01 96.2% 86.3%
3643664 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 47.0 4.85e-01 75.0% 84.0%
3227034 5069.1.3.65 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PF31020 0.65 53.0 4.73e-01 90.0% 68.7%
3925125 4207.1.1.60 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF31020 0.65 53.0 4.83e-01 91.3% 72.7%
5002999 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.65 52.0 5.26e-01 88.7% 88.7%
3357833 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.64 56.0 5.63e-01 96.2% 96.2%
3945879 101.38.1.4 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 0.64 55.0 5.01e-01 97.5% 71.8%
3965415 3827.1.1.1 alpha duplicates or obligate multimers › Hypothetical protein PA0856 › Hypothetical protein PA0856 › Hypothetical protein PA0856 › DUF2059 0.64 47.0 4.08e-01 77.5% 75.8%
3721462 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.63 53.0 4.00e-01 96.2% 95.3%
4954611 1079.1.1.19 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DUF2162 0.63 55.0 4.24e-01 100.0% 87.4%
2771599 592.3.1.1 alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › Spidroin_N 0.63 53.0 4.48e-01 97.5% 55.6%
4983336 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.62 55.0 3.94e-01 98.8% 68.6%
3668680 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.62 52.0 4.90e-01 95.0% 98.0%
3277682 191.1.1.1 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.61 52.0 4.15e-01 95.0% 49.7%
3601936 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 44.0 3.66e-01 76.2% 77.1%
3213752 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 52.0 4.76e-01 100.0% 73.3%
4026947 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 50.0 5.04e-01 92.5% 91.3%
5046548 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 53.0 3.80e-01 98.8% 66.7%
4952080 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.60 49.0 3.68e-01 91.3% 49.8%
4967186 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 50.0 3.60e-01 96.2% 65.8%
4032004 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.58 46.0 3.13e-01 87.5% 41.7%
3513473 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 50.0 4.12e-01 98.8% 70.7%
3998222 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 46.0 3.77e-01 91.3% 51.3%
3997392 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 43.0 3.45e-01 87.5% 83.3%
3541302 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 44.0 3.62e-01 86.3% 52.4%
4029938 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 47.0 3.92e-01 98.8% 68.7%
3639001 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 47.0 3.93e-01 96.2% 72.9%
3211763 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 45.0 3.74e-01 93.8% 54.7%
3219325 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 43.0 3.56e-01 91.3% 51.9%
3208650 6055.1.1.18 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › LMBR1 0.54 41.0 3.23e-01 81.2% 99.4%
3197604 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.53 45.0 3.80e-01 98.8% 87.9%
3632944 109.4.1.162 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.51 41.0 2.78e-01 93.8% 22.2%
3244338 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 41.0 3.30e-01 92.5% 55.2%