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JN638751.1__AEO93370.1__G_108__00100

Bact-Vir

JN638751.1__AEO93370.1__G_108__00100

Identity

Accession:
JN638751 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Donellivirus› Bacillus_phage_G

TaxID: 2884420

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-93
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.67 37.0 4.14e-01 75.3% 68.7%
3ekiA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.65 52.0 4.09e-01 87.1% 83.5%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 35.0 3.43e-01 77.6% 47.3%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 39.0 3.23e-01 78.8% 34.6%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.63 52.0 4.77e-01 90.6% 69.4%
2f9jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 35.0 3.62e-01 78.8% 58.7%
1a9nD00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 35.0 3.43e-01 78.8% 50.5%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 38.0 3.24e-01 83.5% 38.8%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 45.0 3.69e-01 80.0% 77.4%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.58 46.0 3.53e-01 87.1% 69.4%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 33.0 3.34e-01 78.8% 52.8%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 35.0 3.60e-01 80.0% 63.3%
1we8A01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 35.0 3.53e-01 77.6% 59.5%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.56 45.0 3.40e-01 92.9% 92.3%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.58e-01 82.4% 97.8%
6c6uN00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.54 34.0 3.29e-01 95.3% 55.1%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 43.0 3.48e-01 91.8% 60.7%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 2.91e-01 70.6% 77.9%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 30.0 3.05e-01 77.6% 57.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617948 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 38.0 3.47e-01 80.0% 42.7%
3486254 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 37.0 3.87e-01 80.0% 58.7%
4583844 327.16.1.7 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Rhomboid_N 0.66 35.0 3.92e-01 82.4% 66.2%
3927592 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 37.0 3.22e-01 80.0% 36.2%
5000603 7587.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.63 46.0 4.32e-01 76.5% 83.8%
4980707 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 46.0 4.32e-01 80.0% 62.9%
3995009 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 36.0 3.64e-01 77.6% 57.6%
3212979 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 33.0 3.24e-01 75.3% 46.3%
3875444 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 34.0 3.10e-01 77.6% 40.9%
4014111 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 34.0 3.28e-01 77.6% 49.5%
3783244 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 40.0 3.03e-01 72.9% 88.9%
3756621 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 33.0 3.46e-01 77.6% 60.0%
4153244 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 31.0 3.37e-01 74.1% 61.4%
3798411 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 33.0 3.38e-01 77.6% 56.5%
3211310 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 35.0 3.41e-01 89.4% 56.8%
3407748 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 33.0 3.20e-01 78.8% 52.6%
5030783 242.1.1.3 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.52 40.0 3.84e-01 95.3% 71.6%
D2 medium residues 94-180
PDB
Domain cluster: rep: AB605730.1__BAK53019.1__X__00207__D79-181
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 36.0 3.33e-01 82.8% 39.6%
1yhfA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 36.0 3.38e-01 83.9% 40.9%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 37.0 3.62e-01 83.9% 50.0%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 36.0 3.20e-01 83.9% 37.3%
4mv2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 36.0 3.22e-01 83.9% 39.2%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 35.0 3.29e-01 82.8% 42.7%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 41.0 3.95e-01 74.7% 58.6%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 35.0 3.35e-01 82.8% 45.7%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 36.0 3.99e-01 77.0% 76.1%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 42.0 3.84e-01 78.2% 62.3%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.57 45.0 3.81e-01 86.2% 69.3%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 3.51e-01 82.8% 67.8%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 34.0 3.85e-01 78.2% 91.8%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.52 38.0 3.96e-01 78.2% 88.9%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 38.0 3.90e-01 83.9% 81.0%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 36.0 2.86e-01 71.3% 87.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026281 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.64 35.0 3.30e-01 82.8% 41.8%
3248868 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.61 40.0 3.90e-01 74.7% 59.0%
3295690 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.61 41.0 4.60e-01 80.5% 93.8%
3525409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 39.0 3.97e-01 85.1% 68.2%
3227231 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.58 41.0 4.58e-01 78.2% 100.0%
3652684 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.58 40.0 4.29e-01 86.2% 82.7%
4028910 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.58 36.0 4.01e-01 73.6% 83.1%
3255441 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.58 38.0 3.43e-01 92.0% 46.5%
4553664 7590.1.1.7 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.57 48.0 3.36e-01 92.0% 73.2%
3787008 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.57 37.0 4.17e-01 80.5% 92.2%
3403711 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.56 38.0 3.70e-01 74.7% 61.0%
3782773 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.55 35.0 4.08e-01 73.6% 100.0%
3702727 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 3.73e-01 85.1% 64.0%
3649017 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 45.0 4.46e-01 96.6% 90.0%
4466448 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.53 42.0 3.24e-01 87.4% 51.0%
4021031 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.53 42.0 3.12e-01 87.4% 52.1%
3493153 2485.1.1.49 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 0.53 43.0 3.25e-01 90.8% 39.1%
5030638 2492.1.1.16 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 0.53 42.0 3.62e-01 86.2% 83.0%
5048876 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.52 37.0 4.19e-01 81.6% 100.0%