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JN638751.1__AEO93405.1__G_143__00135
Bact-VirJN638751.1__AEO93405.1__G_143__00135
Identity
- Accession:
- JN638751 ↗
- Kingdom:
- phage
Quality
76.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-43
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.88 | 66.0 | 5.52e-01 | 80.5% | 49.3% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.88 | 65.0 | 3.78e-01 | 80.5% | 10.5% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.87 | 65.0 | 4.05e-01 | 80.5% | 17.4% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.85 | 75.0 | 6.84e-01 | 100.0% | 74.5% |
| 4fvmA07 | 1.20.1280.310 | Mainly Alpha › Up-down Bundle › Monooxygenase › B family DNA polymerase, thumb domain, four helix bundle | 0.84 | 64.0 | 5.46e-01 | 82.9% | 53.8% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.78 | 70.0 | 6.32e-01 | 100.0% | 85.5% |
| 5f42A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.78 | 57.0 | 4.60e-01 | 80.5% | 40.2% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 52.0 | 4.72e-01 | 78.0% | 56.1% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.72 | 61.0 | 4.16e-01 | 100.0% | 44.4% |
| 2r7hB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.71 | 59.0 | 4.05e-01 | 100.0% | 45.3% |
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.70 | 49.0 | 4.12e-01 | 75.6% | 43.2% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.70 | 48.0 | 3.93e-01 | 73.2% | 41.6% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.68 | 48.0 | 3.35e-01 | 80.5% | 22.1% |
| 4y7dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.65 | 52.0 | 3.23e-01 | 97.6% | 42.6% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 44.0 | 3.64e-01 | 73.2% | 53.8% |
| 4p32B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 52.0 | 3.30e-01 | 97.6% | 29.6% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 45.0 | 3.35e-01 | 75.6% | 29.8% |
| 2yzcA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.62 | 44.0 | 2.75e-01 | 82.9% | 12.2% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.62 | 51.0 | 4.05e-01 | 100.0% | 56.8% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.60 | 42.0 | 3.31e-01 | 75.6% | 34.4% |
| 4j6oA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.60 | 45.0 | 2.78e-01 | 80.5% | 18.4% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 42.0 | 3.05e-01 | 75.6% | 50.9% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.59 | 43.0 | 3.49e-01 | 80.5% | 48.8% |
| 8a93D01 | 1.10.8.420 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 | 0.58 | 46.0 | 4.71e-01 | 90.2% | 94.9% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.58 | 46.0 | 4.34e-01 | 95.1% | 92.5% |
| 3cz6A01 | 1.20.120.1480 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 43.0 | 3.43e-01 | 95.1% | 36.5% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 48.0 | 3.01e-01 | 100.0% | 91.1% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 41.0 | 3.79e-01 | 100.0% | 57.6% |
| 3go9A01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 46.0 | 2.91e-01 | 95.1% | 33.2% |
| 3vdpA01 | 1.10.8.420 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 | 0.55 | 45.0 | 4.29e-01 | 100.0% | 84.6% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 37.0 | 3.31e-01 | 92.7% | 47.9% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 38.0 | 3.64e-01 | 100.0% | 69.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3393934 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.97 | 65.0 | 7.49e-01 | 70.7% | 96.7% |
| 4202292 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.93 | 69.0 | 4.18e-01 | 78.0% | 14.9% |
| 3223457 | 101.1.2.661 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD | 0.90 | 67.0 | 3.95e-01 | 80.5% | 11.8% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.89 | 67.0 | 3.96e-01 | 80.5% | 12.0% |
| 3309464 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.89 | 71.0 | 4.88e-01 | 85.4% | 28.8% |
| 5020110 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.87 | 65.0 | 4.80e-01 | 80.5% | 33.0% |
| 5006804 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.87 | 65.0 | 4.00e-01 | 80.5% | 86.4% |
| 5018387 | 604.18.1.0 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) | 0.84 | 62.0 | 4.57e-01 | 80.5% | 31.4% |
| 3267759 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.83 | 72.0 | 4.72e-01 | 95.1% | 35.6% |
| 396389 | 632.2.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B | 0.83 | 72.0 | 6.65e-01 | 100.0% | 77.4% |
| 3457578 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.81 | 60.0 | 5.87e-01 | 80.5% | 73.3% |
| 4455640 | 4307.1.1.31 ↗ | alpha duplicates or obligate multimers › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 dimerisation domain-like › PLDc_N | 0.81 | 69.0 | 5.99e-01 | 100.0% | 63.1% |
| 3733247 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.80 | 70.0 | 4.24e-01 | 97.6% | 29.4% |
| 4026047 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.80 | 59.0 | 4.64e-01 | 80.5% | 38.8% |
| 3232753 | 632.2.1.21 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ANIS5_cation-bd | 0.79 | 58.0 | 4.91e-01 | 80.5% | 48.6% |
| 4009690 | 7523.1.1.25 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Phosphonate-bd | 0.78 | 56.0 | 3.59e-01 | 78.0% | 16.4% |
| 4033037 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.78 | 63.0 | 5.31e-01 | 92.7% | 90.0% |
| 5001687 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.77 | 69.0 | 5.97e-01 | 100.0% | 81.0% |
| 4003615 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.77 | 56.0 | 3.49e-01 | 80.5% | 14.7% |
| 3683174 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.76 | 64.0 | 5.78e-01 | 100.0% | 83.3% |
| 3627838 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.76 | 64.0 | 5.18e-01 | 92.7% | 61.3% |
| 4011398 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.76 | 55.0 | 4.41e-01 | 80.5% | 38.8% |
| 4030768 | 632.2.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B | 0.76 | 63.0 | 5.84e-01 | 97.6% | 74.5% |
| 3986220 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 55.0 | 4.01e-01 | 80.5% | 28.7% |
| 3577145 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.75 | 55.0 | 5.04e-01 | 80.5% | 60.0% |
| 3789508 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.75 | 61.0 | 5.30e-01 | 100.0% | 90.0% |
| 3389059 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.73 | 53.0 | 4.90e-01 | 80.5% | 60.0% |
| 3592341 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.72 | 51.0 | 3.13e-01 | 75.6% | 13.3% |
| 3817587 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 56.0 | 5.28e-01 | 95.1% | 87.3% |
| 3383596 | 105.1.1.57 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › At2g29880_C | 0.72 | 59.0 | 5.01e-01 | 100.0% | 54.7% |
| 3623057 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.72 | 52.0 | 2.86e-01 | 80.5% | 5.2% |
| 5004436 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 52.0 | 3.47e-01 | 80.5% | 19.1% |
| 3316616 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.71 | 58.0 | 5.44e-01 | 100.0% | 76.4% |
| 3371150 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.70 | 58.0 | 5.36e-01 | 97.6% | 89.1% |
| 4034229 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.69 | 58.0 | 4.85e-01 | 100.0% | 88.0% |
| 3312410 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.69 | 54.0 | 5.11e-01 | 97.6% | 90.9% |
| 4034449 | 109.28.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC | 0.66 | 53.0 | 3.77e-01 | 100.0% | 46.0% |
| 4027013 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.64 | 45.0 | 4.16e-01 | 75.6% | 56.4% |
| 4942414 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.63 | 46.0 | 4.13e-01 | 82.9% | 57.1% |
| 3408508 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.60 | 44.0 | 3.60e-01 | 80.5% | 71.2% |
| 3403227 | 192.8.1.465 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 | 0.58 | 40.0 | 3.20e-01 | 82.9% | 94.5% |
| 4652689 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.56 | 45.0 | 4.31e-01 | 97.6% | 86.0% |
| 4115591 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.54 | 45.0 | 2.60e-01 | 92.7% | 54.5% |