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JN638751.1__AEO93424.1__G_164__00156
Bact-VirJN638751.1__AEO93424.1__G_164__00156
Identity
- Accession:
- JN638751 ↗
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-64
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9xD02 | 3.40.5.60 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.66 | 51.0 | 5.24e-01 | 100.0% | 90.0% |
| 2lsmA00 | 3.40.5.70 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain | 0.63 | 48.0 | 4.90e-01 | 100.0% | 83.6% |
| 4obiA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.61 | 42.0 | 3.78e-01 | 72.6% | 74.7% |
| 1wktA00 | 2.60.20.20 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.60 | 47.0 | 4.24e-01 | 90.3% | 61.4% |
| 3thpA02 | 2.60.120.1520 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 3.94e-01 | 100.0% | 55.9% |
| 3bb6C00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 48.0 | 4.03e-01 | 100.0% | 51.8% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 47.0 | 3.54e-01 | 100.0% | 34.8% |
| 2wz8A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 49.0 | 3.91e-01 | 100.0% | 56.3% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.57 | 48.0 | 4.01e-01 | 100.0% | 68.4% |
| 2qikA02 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.55 | 48.0 | 3.60e-01 | 98.4% | 67.5% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 38.0 | 2.68e-01 | 74.2% | 94.6% |
| 1tzdA00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.53 | 41.0 | 2.85e-01 | 88.7% | 77.0% |
| 2byvE05 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 38.0 | 3.58e-01 | 79.0% | 89.9% |
| 1wftA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.75e-01 | 98.4% | 89.4% |
| 4n2cA02 | 2.60.40.1700 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain | 0.52 | 43.0 | 3.26e-01 | 100.0% | 42.8% |
| 2ztbA02 | 2.60.40.4280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.74e-01 | 96.8% | 67.7% |
| 3gqhA02 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.51 | 28.0 | 3.21e-01 | 90.3% | 75.0% |
| 2hxsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 2.91e-01 | 85.5% | 79.2% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 45.0 | 4.48e-01 | 100.0% | 96.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3502355 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.71 | 56.0 | 5.85e-01 | 96.8% | 94.5% |
| 3994897 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.71 | 57.0 | 5.82e-01 | 100.0% | 91.7% |
| 3621402 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.70 | 56.0 | 5.71e-01 | 98.4% | 90.0% |
| 3740164 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 48.0 | 3.98e-01 | 85.5% | 80.9% |
| 3966483 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 48.0 | 4.00e-01 | 100.0% | 70.4% |
| 4619601 | 10.32.1.48 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 | 0.56 | 47.0 | 3.86e-01 | 100.0% | 64.8% |
| 3507132 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.54 | 41.0 | 3.36e-01 | 85.5% | 81.6% |
| 4654417 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.54 | 45.0 | 3.94e-01 | 96.8% | 80.0% |
| 3266302 | 543.1.1.0 ↗ | few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related | 0.52 | 39.0 | 2.92e-01 | 80.6% | 81.2% |
| 4932391 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.52 | 40.0 | 3.61e-01 | 85.5% | 98.9% |
| 4583667 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.51 | 40.0 | 3.66e-01 | 93.5% | 94.4% |
| 5045979 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.50 | 40.0 | 2.81e-01 | 100.0% | 87.0% |
| 5054559 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 39.0 | 3.37e-01 | 88.7% | 77.1% |