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JN638751.1__AEO93455.1__G_195__00187

Bact-Vir

JN638751.1__AEO93455.1__G_195__00187

Identity

Accession:
JN638751 ↗
Kingdom:
phage

Quality

63.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Donellivirus› Bacillus_phage_G

TaxID: 2884420

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-60
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.70 39.0 3.79e-01 100.0% 47.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 5.15e-01 93.0% 100.0%
4ntwB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.63 36.0 3.57e-01 94.7% 52.5%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.62 46.0 4.00e-01 82.5% 90.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.92e-01 96.5% 92.6%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 50.0 4.05e-01 98.2% 48.3%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.60 34.0 3.54e-01 94.7% 57.4%
1pmiA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 49.0 4.03e-01 100.0% 50.4%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.74e-01 100.0% 45.2%
2vm9A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 47.0 3.61e-01 100.0% 54.5%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 47.0 3.47e-01 100.0% 33.1%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 43.0 3.66e-01 87.7% 79.0%
2qjvA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 47.0 3.61e-01 100.0% 41.3%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 3.68e-01 82.5% 55.7%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.59e-01 100.0% 46.1%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.57e-01 100.0% 60.0%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.15e-01 89.5% 93.7%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.54 45.0 3.33e-01 100.0% 43.9%
1p1eA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 36.0 3.11e-01 71.9% 90.1%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 43.0 3.29e-01 100.0% 85.6%
2k47A00 1.10.8.440 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Vesicular stomatitis virus phosphoprotein C-terminal domain 0.53 37.0 3.47e-01 73.7% 97.3%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 38.0 3.16e-01 82.5% 87.6%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 3.42e-01 100.0% 58.5%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.24e-01 98.2% 60.3%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 37.0 3.11e-01 82.5% 55.6%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.02e-01 86.0% 86.7%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.52 39.0 2.74e-01 86.0% 33.2%
4yubB01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.52 36.0 2.39e-01 73.7% 47.5%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 42.0 2.98e-01 100.0% 61.4%
5h5oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.43e-01 100.0% 48.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716713 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 61.0 6.46e-01 94.7% 96.0%
3168819 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.75 64.0 5.92e-01 94.7% 91.9%
3994897 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.71 61.0 5.99e-01 94.7% 91.7%
3060788 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.67 57.0 5.66e-01 94.7% 91.7%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 33.0 2.74e-01 86.0% 28.0%
3708356 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.65 56.0 5.00e-01 100.0% 85.9%
4396535 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 43.0 3.95e-01 80.7% 83.7%
3705470 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.58 41.0 4.43e-01 87.7% 97.8%
4182877 4968.1.1.1 ↗ a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2 0.56 49.0 4.11e-01 100.0% 60.0%
1279881 10.12.1.22 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.56 47.0 3.62e-01 100.0% 42.2%
3224349 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 45.0 4.03e-01 100.0% 71.6%
3172582 10.32.1.204 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_2 0.56 46.0 3.44e-01 100.0% 72.4%
4236729 10.12.1.33 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth 0.55 43.0 3.44e-01 100.0% 39.3%
4295323 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 46.0 3.89e-01 100.0% 79.0%
3994994 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 44.0 3.35e-01 100.0% 49.7%
4009311 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.54 40.0 3.83e-01 98.2% 69.2%
3911909 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.54 38.0 2.58e-01 75.4% 50.0%
3487747 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.43e-01 100.0% 49.2%
3781272 10.32.1.204 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_2 0.51 41.0 2.99e-01 100.0% 56.0%
3586087 11.1.4.111 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3 0.51 40.0 3.55e-01 100.0% 95.0%
3253557 304.7.1.3 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.51 36.0 3.07e-01 77.2% 82.0%
3714025 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.50 36.0 2.68e-01 100.0% 27.5%
4203006 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.50 44.0 3.56e-01 98.2% 88.2%
3186068 10.32.1.204 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_2 0.50 41.0 3.07e-01 100.0% 38.9%
D2 medium residues 146-179
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_050077-3300045988-Ga0495776_132136_4883_5203__D66-99