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JN638751.1__AEO93517.1__G_258__00250

Bact-Vir

JN638751.1__AEO93517.1__G_258__00250

Identity

Accession:
JN638751 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Donellivirus› Bacillus_phage_G

TaxID: 2884420

Cluster

View cluster (68 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 316-403
PDB
Domain cluster: rep: IMGVR_UViG_3300025288_001461-3300025288-Ga0210044_10000075107__D324-402
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10431.16 best ClpB_D2-small 48.0 1.50e-12 96.6% 82.7%
D2 medium residues 58-94_108-137_245-314
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01078.28 best Mg_chelatase 24.5 2.20e-05 53.3% 20.8%
PF00158.33 Sigma54_activat 21.3 2.70e-04 38.7% 21.4%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1um8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.86 83.0 6.70e-01 98.5% 97.8%
1g41A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 62.0 5.36e-01 97.8% 99.0%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.60 34.0 3.66e-01 83.2% 63.6%
3m6aA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 54.0 5.21e-01 97.8% 100.0%
2c9oA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 53.0 4.63e-01 99.3% 91.5%
5ygrB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 49.0 4.10e-01 98.5% 88.1%
1jflA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 37.0 4.04e-01 95.6% 83.5%
1in4A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 4.81e-01 94.2% 96.0%
3s7zA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 36.0 3.92e-01 95.6% 81.7%
4d9kA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 48.0 4.03e-01 99.3% 83.1%
2gn0B01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 48.0 4.09e-01 98.5% 92.4%
1jbwA02 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.52 32.0 3.51e-01 88.3% 74.1%
4lpsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 33.0 2.89e-01 89.8% 39.5%
2jfzA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 4.31e-01 83.9% 100.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3995568 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.92 89.0 6.62e-01 98.5% 96.9%
None — 0.91 88.0 6.75e-01 98.5% 94.0%
None — 0.90 88.0 6.49e-01 100.0% 84.0%
None — 0.90 88.0 6.44e-01 100.0% 83.0%
None — 0.90 87.0 6.76e-01 100.0% 98.5%
4172408 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.89 87.0 6.70e-01 100.0% 95.5%
None — 0.89 87.0 6.14e-01 100.0% 72.3%
None — 0.89 87.0 6.38e-01 100.0% 82.3%
4388243 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 87.0 6.07e-01 100.0% 70.8%
4090171 2004.1.1.424 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2, AAA_5 0.89 87.0 6.62e-01 100.0% 94.1%
None — 0.88 83.0 6.12e-01 97.1% 78.7%
3344098 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 85.0 5.84e-01 100.0% 71.0%
3623678 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.85 83.0 6.25e-01 100.0% 85.7%
None — 0.84 82.0 6.18e-01 100.0% 82.5%
3248250 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.66 64.0 4.47e-01 99.3% 87.1%
4063599 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.58 39.0 3.60e-01 89.8% 52.8%
3958641 2004.1.1.260 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.57 37.0 3.46e-01 92.7% 51.8%
4927683 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.56 49.0 4.11e-01 92.7% 84.0%
None — 0.56 49.0 4.23e-01 92.7% 91.7%
None — 0.56 49.0 4.23e-01 92.7% 87.3%
3785318 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.55 49.0 4.26e-01 94.9% 92.5%
4021329 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 4.15e-01 91.2% 91.8%
5017850 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 49.0 4.79e-01 97.1% 98.0%
5056933 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.53 47.0 4.78e-01 94.2% 98.5%
3932850 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.52 47.0 4.38e-01 95.6% 100.0%
3613438 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.51 44.0 3.72e-01 89.8% 100.0%
3275371 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 3.31e-01 88.3% 71.4%
D3 medium residues 138-188_200-244
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07724.21 best AAA_2 58.3 1.40e-15 100.0% 51.8%
PF00004.36 AAA 21.3 4.20e-04 99.0% 51.1%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1um8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.98 70.0 5.01e-01 100.0% 30.4%
4mp8A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 40.0 3.31e-01 100.0% 32.4%
2rbgA00 3.40.50.11100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 42.0 3.90e-01 100.0% 50.0%
3vpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 38.0 3.36e-01 100.0% 40.4%
6az0A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 49.0 4.02e-01 100.0% 46.5%
3t5tA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 45.0 3.61e-01 100.0% 39.4%
3dg3A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.61 37.0 2.78e-01 100.0% 22.6%
4rkcA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 40.0 3.03e-01 100.0% 27.3%
4ltyA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 44.0 3.20e-01 100.0% 27.0%
3jyoA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 34.0 3.00e-01 100.0% 37.1%
4kt7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 39.0 3.00e-01 100.0% 28.6%
2xciA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 40.0 3.23e-01 100.0% 35.8%
6smoB02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 38.0 3.36e-01 93.8% 43.8%
3a04A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 42.0 3.19e-01 100.0% 30.7%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 3.88e-01 100.0% 48.7%
4f53A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 45.0 2.95e-01 92.7% 90.6%
3tr9B00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.55 43.0 3.16e-01 100.0% 30.0%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 39.0 2.59e-01 100.0% 17.0%
4q69B00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 45.0 2.96e-01 93.8% 92.9%
3me8B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 36.0 3.18e-01 100.0% 42.9%
1u1jA01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.53 44.0 2.94e-01 100.0% 21.8%
5bjuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 40.0 2.91e-01 100.0% 26.6%
1q7zA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.52 41.0 2.94e-01 100.0% 28.0%
5epfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 32.0 2.84e-01 100.0% 38.3%
1yi8B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 3.03e-01 100.0% 35.6%
7caqA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.50 44.0 3.54e-01 100.0% 58.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 1.00 98.0 6.62e-01 100.0% 38.2%
None — 1.00 98.0 6.70e-01 100.0% 40.4%
4051403 2004.1.1.456 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N, AAA_2 0.99 97.0 6.67e-01 100.0% 40.4%
4247371 2004.1.1.669 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2 0.99 97.0 6.63e-01 100.0% 39.6%
None — 0.99 97.0 6.37e-01 100.0% 34.0%
4554144 2004.1.1.441 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2 0.99 97.0 6.64e-01 100.0% 40.4%
None — 0.99 97.0 6.21e-01 100.0% 30.6%
None — 0.99 97.0 6.41e-01 100.0% 35.1%
4388243 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.99 96.0 6.16e-01 100.0% 29.7%
None — 0.98 96.0 6.40e-01 100.0% 35.7%
None — 0.98 96.0 6.64e-01 100.0% 41.2%
None — 0.98 96.0 6.56e-01 100.0% 39.6%
None — 0.98 96.0 6.46e-01 100.0% 37.5%
None — 0.98 95.0 6.35e-01 100.0% 35.1%
4078571 2004.1.1.424 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2, AAA_5 0.98 95.0 6.70e-01 100.0% 43.7%
3364572 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.98 95.0 6.28e-01 100.0% 34.0%
None — 0.98 95.0 6.32e-01 100.0% 35.1%
3344098 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.98 95.0 5.99e-01 100.0% 27.4%
4090171 2004.1.1.424 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2, AAA_5 0.98 95.0 6.51e-01 100.0% 39.6%
None — 0.98 95.0 6.32e-01 100.0% 35.1%
4568966 2004.1.1.456 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N, AAA_2 0.98 95.0 6.64e-01 100.0% 42.8%
4172408 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.97 95.0 6.53e-01 100.0% 40.4%
3674894 2004.1.1.441 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2 0.97 94.0 6.36e-01 100.0% 36.9%
4490249 2004.1.1.545 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2, AAA_5 0.97 94.0 6.65e-01 100.0% 43.7%
None — 0.93 90.0 6.00e-01 100.0% 34.4%
None — 0.92 90.0 6.17e-01 100.0% 40.4%
3995568 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.92 89.0 6.03e-01 100.0% 37.2%
3576068 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.91 75.0 5.92e-01 84.4% 54.7%
3212870 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.90 88.0 5.80e-01 100.0% 33.3%
3665498 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.90 87.0 5.88e-01 100.0% 37.3%
3194715 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.89 86.0 5.82e-01 100.0% 33.7%
3623678 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.86 82.0 5.55e-01 100.0% 33.6%
4946723 7592.1.1.13 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csm6_6H 0.63 43.0 3.75e-01 100.0% 45.3%
3789539 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.61 41.0 3.78e-01 100.0% 51.5%
None — 0.59 49.0 3.77e-01 100.0% 40.0%
4934401 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.57 38.0 2.80e-01 100.0% 25.5%
4264240 2002.1.1.53 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.56 39.0 3.05e-01 100.0% 31.8%
5013075 2004.1.1.1200 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 0.53 47.0 4.08e-01 100.0% 63.9%
3946334 101.1.2.121 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_43 0.53 31.0 3.26e-01 84.4% 61.1%
1888054 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.53 38.0 3.03e-01 100.0% 33.5%
3928585 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.53 38.0 3.01e-01 100.0% 32.9%
4654266 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.51 44.0 3.30e-01 100.0% 47.5%