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JN638751.1__AEO93656.1__G_397__00389

Bact-Vir

JN638751.1__AEO93656.1__G_397__00389

Identity

Accession:
JN638751 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-91
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zqeA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.77 64.0 6.66e-01 97.7% 97.5%
1i9gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 62.0 4.80e-01 100.0% 41.3%
2b25A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 58.0 4.49e-01 96.5% 39.6%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.70 61.0 6.01e-01 100.0% 89.2%
3htxD03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 63.0 4.61e-01 98.8% 48.0%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.69 61.0 6.19e-01 98.8% 97.7%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 50.0 5.27e-01 94.2% 88.0%
1mjfB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 58.0 4.27e-01 97.7% 36.4%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 58.0 4.67e-01 95.3% 50.9%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 55.0 4.04e-01 96.5% 33.9%
3lpmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 54.0 4.04e-01 100.0% 34.4%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 60.0 4.17e-01 98.8% 37.5%
1wznA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 56.0 4.38e-01 97.7% 42.0%
2oo3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 60.0 4.22e-01 100.0% 43.1%
1qmhA01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.66 56.0 4.07e-01 100.0% 33.5%
3jwhA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 58.0 4.54e-01 100.0% 49.2%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 57.0 4.36e-01 96.5% 50.0%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 45.0 4.53e-01 70.9% 72.4%
6fdfA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 56.0 4.36e-01 96.5% 49.7%
3g88A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 3.83e-01 100.0% 32.2%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 57.0 4.50e-01 100.0% 49.4%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 53.0 4.36e-01 98.8% 48.8%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 45.0 3.57e-01 91.9% 36.8%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.64 54.0 3.88e-01 97.7% 31.8%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.83e-01 86.0% 96.7%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 48.0 3.79e-01 96.5% 40.3%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 51.0 4.28e-01 96.5% 62.9%
3tebB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.61 52.0 3.79e-01 98.8% 36.7%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 52.0 4.03e-01 97.7% 44.6%
3v4dB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.59 51.0 4.55e-01 97.7% 76.0%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.64e-01 75.6% 83.5%
3ogzA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 51.0 3.24e-01 96.5% 28.4%
2w40A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 47.0 3.44e-01 90.7% 85.4%
6izhE00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.58 50.0 4.54e-01 98.8% 87.6%
3k12D00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.57 49.0 4.51e-01 100.0% 77.5%
1nj1A03 3.30.110.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS 0.57 43.0 4.65e-01 96.5% 98.6%
3mr7A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 49.0 3.95e-01 98.8% 93.6%
1gd8A00 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.56 44.0 4.17e-01 87.2% 98.1%
7kpsB01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 48.0 3.88e-01 100.0% 66.5%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 47.0 4.01e-01 97.7% 89.8%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.09e-01 86.0% 99.0%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.06e-01 94.2% 71.4%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.92e-01 93.0% 70.2%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.94e-01 95.3% 75.6%
1fm0E00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.53 38.0 3.26e-01 76.7% 67.6%
2q5wE00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.52 40.0 3.54e-01 86.0% 97.1%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 42.0 4.15e-01 89.5% 91.6%
4b97A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 45.0 3.80e-01 100.0% 58.3%
2xbtA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 44.0 3.67e-01 98.8% 53.8%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.51 44.0 3.51e-01 100.0% 62.2%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 39.0 3.55e-01 83.7% 69.5%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.50 43.0 3.99e-01 97.7% 91.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1298450 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.79 66.0 6.78e-01 97.7% 95.1%
4158753 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.78 65.0 6.79e-01 98.8% 98.7%
4530413 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.77 64.0 6.74e-01 98.8% 100.0%
4337404 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.76 63.0 6.24e-01 98.8% 85.6%
3512301 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 66.0 4.42e-01 96.5% 27.5%
4208386 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.75 61.0 6.29e-01 95.3% 95.0%
4016271 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.75 68.0 6.74e-01 100.0% 96.7%
4029891 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.71 62.0 6.32e-01 95.3% 97.6%
4026343 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.70 61.0 5.95e-01 98.8% 87.4%
4437131 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.69 56.0 4.21e-01 98.8% 36.2%
3621648 2003.1.5.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.69 62.0 3.71e-01 100.0% 14.8%
4025055 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.68 61.0 5.95e-01 100.0% 94.7%
5016597 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 56.0 5.29e-01 93.0% 74.3%
4001476 2003.1.5.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.68 59.0 4.53e-01 97.7% 44.0%
3605491 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.67 60.0 5.40e-01 100.0% 71.7%
3721871 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.66 59.0 4.37e-01 100.0% 39.6%
4575187 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.66 59.0 4.23e-01 100.0% 35.7%
5079175 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.66 58.0 4.24e-01 100.0% 36.5%
3740450 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.65 56.0 5.54e-01 93.0% 96.7%
4157476 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.65 53.0 3.88e-01 100.0% 32.1%
4998143 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.64 46.0 3.47e-01 75.6% 30.2%
5064883 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.64 54.0 4.07e-01 95.3% 41.3%
4949366 2003.1.5.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.64 57.0 3.94e-01 98.8% 32.7%
3187620 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.64 56.0 4.11e-01 100.0% 37.5%
3811740 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.64 57.0 4.10e-01 100.0% 36.3%
4482107 2003.1.5.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.64 57.0 3.90e-01 98.8% 33.3%
3741660 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.64 54.0 3.74e-01 96.5% 27.9%
4512937 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.63 49.0 3.73e-01 94.2% 34.8%
3559795 2003.1.5.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.63 55.0 4.12e-01 100.0% 39.1%
4585891 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.61 53.0 3.93e-01 97.7% 38.3%
3700199 320.4.1.0 a+b two layers › R3H domain-like › PUB domain › PUB domain 0.60 50.0 4.59e-01 91.9% 70.4%
210670 2.1.1.95 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C 0.60 42.0 3.71e-01 74.4% 87.0%
4100576 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.59 50.0 4.76e-01 98.8% 78.0%
4078912 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 49.0 4.08e-01 94.2% 59.4%
3641833 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.58 43.0 3.86e-01 100.0% 55.8%
4933637 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 45.0 4.30e-01 82.6% 75.0%
4954535 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 44.0 4.34e-01 88.4% 75.8%
5057183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 47.0 4.58e-01 88.4% 90.5%
4972477 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 45.0 4.24e-01 84.9% 72.4%
4943911 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 49.0 3.36e-01 96.5% 31.9%
4618987 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 43.0 3.78e-01 82.6% 58.4%
3604412 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 42.0 4.08e-01 82.6% 72.0%
4027054 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.54 41.0 3.95e-01 81.4% 100.0%
4632598 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 45.0 4.12e-01 100.0% 68.3%
4993856 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 45.0 4.19e-01 89.5% 82.9%
3225950 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 40.0 3.56e-01 77.9% 98.3%
5030783 242.1.1.3 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.54 44.0 4.32e-01 90.7% 90.5%
3403622 310.1.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.53 42.0 3.85e-01 86.0% 69.6%
4202370 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.53 41.0 3.94e-01 98.8% 72.0%
5032338 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 45.0 4.00e-01 93.0% 82.5%
4611376 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 2.94e-01 94.2% 44.4%
4944155 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.55e-01 90.7% 80.0%
4378054 7587.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases 0.52 44.0 3.99e-01 97.7% 78.4%
4933494 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 38.0 3.73e-01 79.1% 90.5%
3952856 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 36.0 3.50e-01 75.6% 65.0%