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JN638751.1__AEO93689.1__G_431__00423

Bact-Vir

JN638751.1__AEO93689.1__G_431__00423

Identity

Accession:
JN638751 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Donellivirus› Bacillus_phage_G

TaxID: 2884420

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 307-481
PDB
Domain cluster: rep: NC_018087.3__YP_006489032.1__ZZ1p0245__00245__D24-178
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF15711.11 best ILEI 28.4 2.60e-06 61.1% 94.4%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 26.0 3.65e-01 73.1% 86.2%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 21.0 2.77e-01 78.9% 68.1%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 39.0 3.24e-01 81.7% 91.6%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 43.0 4.06e-01 93.7% 86.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797738 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.88 71.0 7.54e-01 97.1% 92.4%
1877732 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.86 71.0 7.59e-01 96.0% 96.8%
3221958 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.85 69.0 7.32e-01 94.9% 94.2%
3221959 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.85 74.0 7.50e-01 98.3% 92.4%
3248682 3570.1.1.0 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.82 68.0 7.36e-01 94.9% 100.0%
2844702 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.82 72.0 7.28e-01 96.6% 90.9%
3530806 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.82 66.0 6.97e-01 96.6% 91.3%
3889825 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.82 72.0 7.34e-01 96.6% 93.5%
3251827 3570.1.1.0 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.81 67.0 7.28e-01 94.9% 100.0%
5029684 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.81 73.0 7.35e-01 93.1% 100.0%
185024 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.80 72.0 7.13e-01 96.6% 89.5%
3530805 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.80 63.0 6.70e-01 88.0% 91.0%
3911505 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.80 63.0 6.66e-01 99.4% 89.4%
3260033 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.80 66.0 7.15e-01 92.0% 100.0%
3737693 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.61 30.0 3.61e-01 73.1% 70.4%
3350152 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 42.0 3.35e-01 73.7% 96.8%
3787053 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.58 38.0 4.18e-01 100.0% 81.4%
185144 11.1.1.146 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 0.56 26.0 3.65e-01 73.1% 86.2%
3200366 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.55 28.0 3.32e-01 78.9% 68.8%
3863267 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 26.0 3.52e-01 73.7% 88.0%
4945022 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 26.0 3.27e-01 94.9% 80.0%
3728922 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.51 43.0 4.11e-01 89.7% 89.8%
3545014 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 22.0 2.81e-01 87.4% 65.0%
D2 medium residues 28-55_161-188
PDB
D3 medium residues 81-160_189-304
PDB
D4 medium residues 513-575
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 31.0 3.32e-01 98.4% 49.1%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.60 37.0 4.11e-01 100.0% 80.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 29.0 3.04e-01 98.4% 45.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 31.0 3.12e-01 98.4% 50.8%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 30.0 3.02e-01 100.0% 47.7%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 40.0 3.80e-01 100.0% 62.0%
4o06A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 41.0 3.56e-01 100.0% 49.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 33.0 3.35e-01 100.0% 61.5%
4ia6B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 34.0 2.17e-01 100.0% 13.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.52 33.0 2.89e-01 100.0% 39.4%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 29.0 2.67e-01 100.0% 36.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.39e-01 100.0% 68.3%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 30.0 2.54e-01 98.4% 29.7%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.15e-01 76.2% 92.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.50 33.0 2.79e-01 100.0% 42.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 31.0 3.20e-01 98.4% 45.0%
2770992 74.1.1.2 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.60 38.0 3.93e-01 100.0% 68.3%
3522718 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 31.0 3.17e-01 98.4% 53.3%
4114942 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 35.0 2.58e-01 100.0% 22.3%
3221509 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.55 35.0 3.88e-01 100.0% 85.4%
4013635 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 33.0 2.08e-01 100.0% 12.2%
3297936 211.1.1.21 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › At5g48480-like_N 0.52 33.0 3.17e-01 100.0% 53.3%
4028824 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.51 36.0 3.84e-01 100.0% 90.7%
3974275 3454.1.1.2 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.51 30.0 3.06e-01 100.0% 52.3%
D5 medium residues 576-638_864-876
PDB
Domain cluster: representative
D6 medium residues 639-715_852-863
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.24e-01 85.4% 46.0%
3e9kA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 43.0 3.18e-01 94.4% 76.9%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 3.23e-01 80.9% 97.7%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 44.0 3.44e-01 100.0% 96.8%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 32.0 3.45e-01 85.4% 74.3%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.87e-01 84.3% 88.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3332406 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.57 42.0 4.06e-01 79.8% 98.1%
3450312 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.54 41.0 3.33e-01 82.0% 84.4%
4880698 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.51 31.0 3.36e-01 84.3% 73.6%
D7 medium residues 716-774
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941343 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.56 44.0 2.82e-01 86.4% 32.1%
5071190 2003.1.1.50 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF364 0.53 43.0 3.37e-01 100.0% 94.8%
D8 medium residues 775-851
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 30.0 3.30e-01 88.3% 67.2%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.76e-01 90.9% 92.4%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.51 33.0 3.42e-01 81.8% 72.5%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 35.0 2.85e-01 72.7% 43.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974565 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 35.0 3.69e-01 87.0% 81.5%
D9 medium residues 975-1012
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.86 68.0 5.18e-01 97.4% 38.8%
1c3cA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.82 73.0 5.44e-01 100.0% 86.8%
3u62A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.81 55.0 3.71e-01 71.1% 23.2%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.79 67.0 4.54e-01 100.0% 31.7%