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JN638751.1__AEO93816.1__G_570__00551
Bact-VirJN638751.1__AEO93816.1__G_570__00551
Identity
- Accession:
- JN638751 ↗
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-110
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04307.20 best | YdjM | 53.4 | 3.30e-14 | 96.4% | 46.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.62 | 36.0 | 3.99e-01 | 76.4% | 71.3% |
| 3toyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 44.0 | 4.19e-01 | 98.2% | 65.4% |
| 4lqkA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.60 | 41.0 | 3.87e-01 | 92.7% | 58.3% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.58 | 35.0 | 3.61e-01 | 100.0% | 62.7% |
| 3hwrA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 38.0 | 3.63e-01 | 83.6% | 56.6% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.57 | 40.0 | 4.05e-01 | 88.2% | 72.7% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.56 | 37.0 | 3.62e-01 | 87.3% | 60.5% |
| 1abvA00 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.55 | 38.0 | 3.96e-01 | 93.6% | 75.2% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.55 | 39.0 | 4.01e-01 | 92.7% | 76.9% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.55 | 33.0 | 3.36e-01 | 95.5% | 59.1% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.54 | 40.0 | 3.44e-01 | 79.1% | 91.8% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 42.0 | 4.10e-01 | 85.5% | 96.8% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 43.0 | 3.90e-01 | 87.3% | 98.6% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 32.0 | 3.39e-01 | 77.3% | 72.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3193283 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 50.0 | 3.98e-01 | 90.0% | 75.9% |
| 3721208 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.60 | 49.0 | 3.96e-01 | 89.1% | 77.0% |
| 3697052 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 49.0 | 3.94e-01 | 89.1% | 75.8% |
| 3179160 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 49.0 | 4.04e-01 | 90.0% | 76.6% |
| 3742401 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 49.0 | 3.97e-01 | 90.0% | 76.3% |
| 3489456 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.59 | 54.0 | 4.80e-01 | 100.0% | 78.7% |
| 3175967 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 48.0 | 3.88e-01 | 90.9% | 72.9% |
| 3602273 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.58 | 52.0 | 4.10e-01 | 98.2% | 72.4% |
| 4959798 | 1076.1.1.3 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › YhfC | 0.58 | 52.0 | 3.98e-01 | 99.1% | 47.6% |
| 4196356 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.57 | 35.0 | 3.41e-01 | 88.2% | 54.2% |
| 5022794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 38.0 | 4.12e-01 | 79.1% | 83.3% |
| 5032432 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.57 | 32.0 | 3.22e-01 | 76.4% | 53.0% |
| 3182954 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 48.0 | 3.93e-01 | 92.7% | 77.1% |
| 4468319 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.56 | 38.0 | 3.46e-01 | 90.0% | 51.3% |
| 4675332 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.54 | 39.0 | 3.86e-01 | 100.0% | 69.2% |
| 3971899 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 45.0 | 3.73e-01 | 92.7% | 77.8% |
| 4986013 | 4994.1.1.0 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like | 0.53 | 37.0 | 4.10e-01 | 87.3% | 94.1% |
| 4975139 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.53 | 40.0 | 2.97e-01 | 79.1% | 78.9% |
| 3337239 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.52 | 43.0 | 3.70e-01 | 100.0% | 57.6% |
| 3508214 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.51 | 42.0 | 3.98e-01 | 88.2% | 79.2% |
| 3449495 | 601.18.1.14 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › MPH2 | 0.51 | 31.0 | 2.85e-01 | 80.9% | 43.8% |
| 3559176 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 42.0 | 4.42e-01 | 100.0% | 99.0% |
| 2035518 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.50 | 34.0 | 3.90e-01 | 80.0% | 96.2% |