←Back to structures
JN662425.1__AEZ50842.1__DC1_00024__00024
Bact-VirJN662425.1__AEZ50842.1__DC1_00024__00024
Identity
- Accession:
- JN662425 ↗
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Taxonomy
TaxID: 2881398
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-82
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 62.0 | 6.06e-01 | 88.2% | 90.3% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 5.51e-01 | 91.2% | 81.2% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 55.0 | 5.51e-01 | 86.8% | 98.5% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 56.0 | 5.51e-01 | 89.7% | 86.1% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 54.0 | 4.31e-01 | 88.2% | 50.8% |
| 2db9A01 | 3.90.70.200 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain | 0.65 | 54.0 | 4.35e-01 | 91.2% | 59.4% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 51.0 | 4.47e-01 | 89.7% | 61.1% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 34.0 | 3.54e-01 | 77.9% | 54.8% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 50.0 | 3.50e-01 | 89.7% | 41.2% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 50.0 | 5.01e-01 | 85.3% | 85.7% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 52.0 | 4.62e-01 | 100.0% | 64.6% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.62 | 51.0 | 4.13e-01 | 95.6% | 59.0% |
| 1vwxT01 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.62 | 50.0 | 4.43e-01 | 86.8% | 67.0% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 48.0 | 4.87e-01 | 88.2% | 85.5% |
| 1lvoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 45.0 | 4.11e-01 | 94.1% | 61.4% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.60 | 42.0 | 4.75e-01 | 82.4% | 100.0% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 40.0 | 2.65e-01 | 79.4% | 17.6% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.59 | 48.0 | 4.16e-01 | 88.2% | 60.6% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 42.0 | 3.36e-01 | 76.5% | 47.2% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 44.0 | 2.70e-01 | 83.8% | 35.3% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 43.0 | 2.62e-01 | 83.8% | 36.2% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 48.0 | 4.16e-01 | 94.1% | 65.4% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 47.0 | 3.39e-01 | 94.1% | 31.5% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 48.0 | 4.14e-01 | 94.1% | 62.5% |
| 1b9vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 43.0 | 2.66e-01 | 83.8% | 23.8% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.92e-01 | 92.6% | 86.5% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.54 | 37.0 | 3.43e-01 | 72.1% | 73.1% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 40.0 | 3.50e-01 | 80.9% | 54.1% |
| 1wqsA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 44.0 | 3.91e-01 | 92.6% | 73.8% |
| 2crmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.77e-01 | 77.9% | 78.5% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 43.0 | 3.80e-01 | 88.2% | 67.0% |
| 2e56A00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 2.90e-01 | 72.1% | 59.0% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 46.0 | 3.60e-01 | 97.1% | 64.6% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.53 | 37.0 | 3.18e-01 | 75.0% | 69.0% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 40.0 | 3.06e-01 | 82.4% | 64.3% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.52 | 37.0 | 3.40e-01 | 77.9% | 77.6% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.52 | 36.0 | 3.22e-01 | 75.0% | 78.1% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 37.0 | 3.13e-01 | 76.5% | 88.9% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 38.0 | 2.34e-01 | 79.4% | 26.9% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.51 | 42.0 | 3.04e-01 | 95.6% | 37.6% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.35e-01 | 89.7% | 48.1% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.51 | 40.0 | 2.94e-01 | 88.2% | 31.9% |
| 3aihB01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.50 | 38.0 | 3.35e-01 | 83.8% | 74.8% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.75 | 49.0 | 4.28e-01 | 72.1% | 46.0% |
| 3972305 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 48.0 | 4.35e-01 | 70.6% | 93.3% |
| 3739064 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 58.0 | 6.00e-01 | 89.7% | 93.8% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.70 | 48.0 | 4.33e-01 | 70.6% | 93.3% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.70 | 48.0 | 4.29e-01 | 72.1% | 90.5% |
| 1144777 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.69 | 48.0 | 4.14e-01 | 72.1% | 63.5% |
| 3423907 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.69 | 59.0 | 4.44e-01 | 94.1% | 85.5% |
| 2879003 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 56.0 | 4.81e-01 | 88.2% | 75.0% |
| 3936726 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 51.0 | 5.61e-01 | 86.8% | 96.4% |
| 3731692 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 56.0 | 4.48e-01 | 89.7% | 66.2% |
| 3183093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 57.0 | 4.43e-01 | 91.2% | 55.7% |
| 4156749 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.67 | 50.0 | 3.36e-01 | 82.4% | 26.0% |
| 3650798 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 57.0 | 4.73e-01 | 92.6% | 85.2% |
| 3646876 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.66 | 46.0 | 4.07e-01 | 72.1% | 69.5% |
| 4565821 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.66 | 50.0 | 3.45e-01 | 83.8% | 33.6% |
| 3817267 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.66 | 46.0 | 4.07e-01 | 72.1% | 68.4% |
| 3830352 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.65 | 54.0 | 5.01e-01 | 89.7% | 84.7% |
| 4943928 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.65 | 54.0 | 4.31e-01 | 89.7% | 77.7% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.65 | 59.0 | 5.23e-01 | 100.0% | 78.9% |
| 3492173 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.65 | 51.0 | 3.27e-01 | 88.2% | 33.6% |
| 3675120 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 54.0 | 4.99e-01 | 91.2% | 83.5% |
| 3713569 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 58.0 | 4.66e-01 | 100.0% | 67.7% |
| 4470603 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.63 | 52.0 | 3.92e-01 | 89.7% | 54.5% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.63 | 54.0 | 5.07e-01 | 91.2% | 81.2% |
| 3650296 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.63 | 52.0 | 4.66e-01 | 89.7% | 74.7% |
| 3520654 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.63 | 49.0 | 3.74e-01 | 91.2% | 37.3% |
| 3266698 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.62 | 52.0 | 4.07e-01 | 89.7% | 56.3% |
| 4606765 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.61 | 49.0 | 4.17e-01 | 86.8% | 59.1% |
| 4062509 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.61 | 49.0 | 4.28e-01 | 88.2% | 64.8% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 4.18e-01 | 89.7% | 60.0% |
| 4441129 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.61 | 48.0 | 4.00e-01 | 86.8% | 56.7% |
| 3253267 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 4.70e-01 | 91.2% | 77.6% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.60 | 49.0 | 4.70e-01 | 92.6% | 93.8% |
| 4273561 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.60 | 48.0 | 3.86e-01 | 86.8% | 50.4% |
| 3823190 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.58 | 49.0 | 3.72e-01 | 92.6% | 40.0% |
| 3396749 | 5.1.5.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N | 0.58 | 45.0 | 2.82e-01 | 82.4% | 21.2% |
| 4235293 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 3.98e-01 | 89.7% | 80.9% |
| 5061147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 45.0 | 4.15e-01 | 89.7% | 71.6% |
| 3460252 | 109.54.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 | 0.57 | 43.0 | 2.64e-01 | 83.8% | 17.1% |
| 3289119 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 48.0 | 3.07e-01 | 98.5% | 25.7% |
| 3988859 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.57 | 45.0 | 3.95e-01 | 86.8% | 64.8% |
| 4422325 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 45.0 | 4.14e-01 | 88.2% | 87.6% |
| 3816593 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.56 | 48.0 | 3.37e-01 | 94.1% | 31.8% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.56 | 43.0 | 3.17e-01 | 85.3% | 31.3% |
| 3952939 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.55 | 42.0 | 4.08e-01 | 82.4% | 78.7% |
| 3897274 | 284.1.1.12 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › TR61B_FKBP-like | 0.55 | 45.0 | 4.48e-01 | 88.2% | 92.9% |
| 3532679 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.55 | 40.0 | 3.84e-01 | 89.7% | 66.7% |
| 3580415 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.54 | 41.0 | 2.67e-01 | 80.9% | 28.9% |
| 3992587 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 41.0 | 2.41e-01 | 82.4% | 11.2% |
| 4958890 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.54 | 37.0 | 3.59e-01 | 85.3% | 62.5% |
| 7745 | 4102.1.1.1 ↗ | a+b duplicates or obligate multimers › AF2331-like › AF2331-like › AF2331-like › AF2331-like | 0.53 | 36.0 | 3.38e-01 | 72.1% | 70.7% |
| 3949052 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 41.0 | 3.82e-01 | 88.2% | 70.0% |
| 4941364 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.52 | 43.0 | 3.79e-01 | 94.1% | 63.8% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 39.0 | 3.15e-01 | 86.8% | 41.3% |
| 3511260 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.50 | 36.0 | 2.80e-01 | 82.4% | 50.0% |