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JN698994.1__AER47618.1__DS6A_64__00064

Bact-Vir

JN698994.1__AER47618.1__DS6A_64__00064

Identity

Accession:
JN698994 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 54.0 6.55e-01 73.6% 100.0%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.78 56.0 5.74e-01 75.0% 79.4%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 52.0 4.92e-01 72.2% 60.0%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.81e-01 72.2% 59.8%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.71 55.0 4.74e-01 81.9% 71.6%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.51e-01 73.6% 59.3%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 52.0 4.74e-01 88.9% 83.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 53.0 3.58e-01 94.4% 29.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.32e-01 87.5% 67.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.88 59.0 7.13e-01 73.6% 100.0%
4529157 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 60.0 5.46e-01 70.8% 56.7%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 60.0 5.33e-01 70.8% 53.7%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.87 63.0 5.16e-01 75.0% 47.5%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 59.0 5.10e-01 70.8% 48.6%
5078377 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 55.0 6.60e-01 72.2% 96.0%
3947091 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 53.0 5.81e-01 70.8% 78.3%
3953111 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 58.0 5.92e-01 76.4% 75.7%
4862437 101.1.1.198 alpha arrays › HTH › HTH › Three-helical HTH › KorB 0.79 53.0 5.52e-01 70.8% 73.5%
4929382 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 55.0 6.33e-01 75.0% 94.5%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.79 54.0 6.09e-01 70.8% 92.7%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 51.0 5.99e-01 70.8% 98.0%
4998605 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.77 56.0 4.79e-01 76.4% 67.3%
5043242 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.75 53.0 5.05e-01 73.6% 95.2%
3997733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 49.0 5.12e-01 70.8% 73.8%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.74 47.0 5.24e-01 73.6% 85.5%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 53.0 4.82e-01 76.4% 57.9%
5002577 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.71 66.0 5.39e-01 97.2% 92.5%
3277186 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.70 49.0 4.08e-01 75.0% 42.4%
5020571 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.70 62.0 5.35e-01 94.4% 96.2%
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.66 55.0 4.33e-01 87.5% 84.1%
5060990 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.64 52.0 3.52e-01 97.2% 23.8%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.62 51.0 4.70e-01 90.3% 77.9%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.61 52.0 3.40e-01 93.1% 61.0%
D2 medium residues 73-128
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13384.13 best HTH_23 33.0 5.50e-08 64.3% 66.0%
PF06056.19 Terminase_5 20.6 4.90e-04 57.1% 50.0%
CATH (86)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.97 67.0 6.89e-01 71.4% 74.1%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 64.0 6.17e-01 71.4% 67.2%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 63.0 5.99e-01 71.4% 63.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 66.0 5.74e-01 75.0% 57.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.92 71.0 5.31e-01 82.1% 36.5%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 67.0 6.89e-01 76.8% 88.9%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 61.0 5.34e-01 71.4% 51.2%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 63.0 6.37e-01 75.0% 80.4%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 68.0 6.67e-01 82.1% 81.4%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 62.0 6.86e-01 80.4% 93.3%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 65.0 6.07e-01 78.6% 71.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 63.0 5.75e-01 76.8% 65.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 63.0 5.61e-01 76.8% 61.8%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 63.0 5.61e-01 76.8% 61.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 65.0 6.19e-01 78.6% 71.4%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.86 63.0 4.12e-01 76.8% 22.8%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 59.0 5.60e-01 71.4% 64.1%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.85 67.0 5.42e-01 87.5% 46.5%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 61.0 5.68e-01 76.8% 65.7%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 63.0 5.87e-01 78.6% 71.6%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 64.0 6.00e-01 85.7% 68.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 63.0 6.74e-01 82.1% 93.8%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 60.0 6.00e-01 76.8% 79.3%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 56.0 6.01e-01 71.4% 81.6%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.82 63.0 5.28e-01 87.5% 49.0%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 61.0 6.24e-01 85.7% 81.8%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 59.0 5.67e-01 76.8% 73.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.81 59.0 4.38e-01 76.8% 36.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 62.0 6.29e-01 83.9% 87.5%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 5.79e-01 80.4% 82.3%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.63e-01 80.4% 78.8%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 5.73e-01 71.4% 92.0%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.79 59.0 5.92e-01 85.7% 80.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 4.87e-01 76.8% 52.9%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 4.77e-01 76.8% 50.6%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 5.29e-01 85.7% 70.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.64e-01 83.9% 79.1%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 63.0 5.48e-01 92.9% 58.8%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.77 65.0 5.23e-01 94.6% 73.4%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 5.35e-01 82.1% 72.2%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 4.65e-01 76.8% 51.6%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 4.52e-01 75.0% 47.9%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 56.0 5.38e-01 78.6% 81.0%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.91e-01 82.1% 92.6%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 53.0 5.81e-01 80.4% 97.7%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 4.72e-01 78.6% 58.0%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 58.0 4.84e-01 83.9% 58.5%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.74 65.0 4.49e-01 100.0% 74.6%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.88e-01 80.4% 98.0%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.29e-01 85.7% 75.3%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.74 63.0 4.35e-01 96.4% 61.8%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.46e-01 80.4% 98.2%
3f1bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.73 63.0 4.42e-01 100.0% 69.4%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.71e-01 78.6% 76.5%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.64e-01 78.6% 75.0%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.72 59.0 4.26e-01 92.9% 65.9%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.31e-01 87.5% 74.0%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.72e-01 78.6% 72.5%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.52e-01 85.7% 85.2%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 4.10e-01 85.7% 39.2%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.07e-01 80.4% 76.6%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.72e-01 80.4% 66.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.30e-01 76.8% 52.1%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 54.0 5.06e-01 83.9% 70.0%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.33e-01 80.4% 58.6%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 61.0 4.15e-01 98.2% 60.9%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.70 49.0 5.22e-01 83.9% 89.1%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.02e-01 85.7% 38.4%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.51e-01 82.1% 64.1%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 53.0 4.41e-01 85.7% 93.2%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.68 51.0 3.46e-01 80.4% 24.9%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.05e-01 89.3% 81.3%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.87e-01 82.1% 75.8%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.12e-01 85.7% 84.6%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 4.96e-01 87.5% 77.3%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 57.0 4.06e-01 100.0% 67.6%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 50.0 5.24e-01 85.7% 95.9%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.66 45.0 4.97e-01 78.6% 100.0%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.60e-01 83.9% 61.8%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 56.0 4.06e-01 100.0% 79.8%
2yveB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 51.0 3.70e-01 92.9% 61.6%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.34e-01 83.9% 63.4%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 48.0 3.46e-01 91.1% 57.4%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 3.92e-01 80.4% 55.2%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 46.0 4.35e-01 85.7% 71.8%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 44.0 4.20e-01 92.9% 86.6%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002577 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.97 77.0 5.71e-01 82.1% 38.3%
4974140 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.96 72.0 5.75e-01 78.6% 50.0%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.96 74.0 5.52e-01 80.4% 38.3%
4987653 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.95 67.0 7.46e-01 73.2% 91.1%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.95 75.0 7.57e-01 85.7% 83.6%
3278040 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 70.0 6.84e-01 78.6% 73.3%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.93 73.0 7.75e-01 87.5% 92.0%
3329805 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.93 64.0 4.42e-01 71.4% 28.1%
235968 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.92 71.0 5.32e-01 82.1% 36.8%
4970998 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.92 69.0 5.50e-01 78.6% 46.0%
4993585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 64.0 6.26e-01 73.2% 68.3%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.91 72.0 7.55e-01 83.9% 94.0%
2792505 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.90 74.0 7.35e-01 85.7% 93.0%
3879118 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.90 66.0 6.74e-01 80.4% 78.2%
3210747 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.90 65.0 7.26e-01 80.4% 93.3%
4946254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 65.0 7.27e-01 78.6% 95.6%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 68.0 7.54e-01 82.1% 100.0%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.89 69.0 6.19e-01 82.1% 61.3%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.89 66.0 7.04e-01 83.9% 88.0%
5011649 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 62.0 6.91e-01 73.2% 91.1%
3953011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 65.0 6.63e-01 78.6% 78.2%
3977377 101.1.2.836 alpha arrays › HTH › HTH › winged helix domain › Terminase_5 0.89 62.0 4.94e-01 73.2% 39.0%
4973199 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.88 64.0 6.32e-01 76.8% 75.0%
4937998 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 59.0 6.55e-01 73.2% 86.7%
3589152 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 64.0 7.06e-01 76.8% 97.8%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.88 67.0 6.34e-01 83.9% 69.2%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 66.0 6.75e-01 80.4% 81.8%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.87 67.0 6.82e-01 87.5% 83.6%
4008959 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 64.0 6.52e-01 82.1% 80.0%
4952294 101.1.2.870 alpha arrays › HTH › HTH › winged helix domain › GerE 0.87 69.0 7.01e-01 83.9% 87.3%
4391758 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.87 68.0 5.62e-01 87.5% 49.5%
4143289 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.87 62.0 6.25e-01 75.0% 76.4%
3946793 101.1.1.259 alpha arrays › HTH › HTH › Three-helical HTH › Terminase_5 0.86 63.0 4.85e-01 78.6% 37.4%
4081576 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.86 68.0 5.59e-01 87.5% 49.5%
4945039 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.86 61.0 6.01e-01 78.6% 70.0%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 64.0 6.05e-01 78.6% 73.8%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 68.0 5.76e-01 85.7% 56.7%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.86 62.0 5.74e-01 76.8% 61.4%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 68.0 6.71e-01 85.7% 83.3%
3590732 101.1.1.364 alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.85 61.0 6.69e-01 82.1% 93.3%
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.85 62.0 6.77e-01 78.6% 95.6%
3287536 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 62.0 6.90e-01 76.8% 95.6%
3411416 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 63.0 6.89e-01 83.9% 100.0%
4008046 101.1.1.348 alpha arrays › HTH › HTH › Three-helical HTH › PF30461 0.85 61.0 6.39e-01 76.8% 84.0%
4174590 101.1.2.61 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.85 69.0 6.49e-01 85.7% 89.2%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 67.0 6.53e-01 83.9% 83.3%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.84 64.0 5.49e-01 80.4% 57.6%
5025805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 61.0 6.20e-01 78.6% 78.2%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.84 62.0 6.33e-01 78.6% 80.0%
3942478 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 64.0 6.52e-01 80.4% 87.3%
4952293 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.84 57.0 6.50e-01 76.8% 100.0%
4945932 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 59.0 4.94e-01 75.0% 84.2%
4060647 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.83 64.0 6.03e-01 83.9% 69.2%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 63.0 5.81e-01 80.4% 67.1%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 61.0 6.65e-01 82.1% 97.8%
3953111 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 67.0 6.22e-01 87.5% 78.6%
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 60.0 6.30e-01 83.9% 86.0%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 63.0 6.56e-01 85.7% 92.0%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.82 59.0 6.41e-01 83.9% 95.6%
4133453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 61.0 6.21e-01 82.1% 81.8%
3904156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 59.0 6.37e-01 83.9% 95.6%
3988724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 60.0 5.90e-01 80.4% 73.3%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 60.0 5.75e-01 80.4% 72.3%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 59.0 5.84e-01 80.4% 75.0%
3505559 101.1.6.19 alpha arrays › HTH › HTH › TrpR › PAX 0.79 64.0 5.75e-01 85.7% 64.0%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 6.07e-01 85.7% 73.8%
3391053 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 58.0 6.34e-01 83.9% 97.8%
4989426 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.78 62.0 6.05e-01 85.7% 88.3%
4653037 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.77 61.0 4.78e-01 87.5% 45.8%
3997733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 5.80e-01 85.7% 72.3%
3469752 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.77 56.0 6.09e-01 78.6% 100.0%
3429968 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.77 57.0 5.29e-01 78.6% 72.9%
4965811 101.1.1.559 alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.77 62.0 6.10e-01 87.5% 86.7%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.77 57.0 4.80e-01 85.7% 47.4%
5028174 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.77 55.0 5.54e-01 78.6% 76.4%
5009656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 56.0 5.37e-01 76.8% 70.8%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.76 58.0 5.84e-01 80.4% 81.8%
5004840 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 5.73e-01 92.9% 76.2%
4876273 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.76 55.0 5.21e-01 76.8% 73.1%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 61.0 5.16e-01 89.3% 57.9%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.76 56.0 5.72e-01 85.7% 81.8%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.75 61.0 6.00e-01 87.5% 85.0%
5053505 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.74 56.0 5.80e-01 85.7% 94.0%
4998375 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 56.0 4.89e-01 82.1% 57.6%
3350525 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.73 54.0 5.13e-01 78.6% 76.9%
3930155 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 4.56e-01 85.7% 45.5%
5045749 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.73 57.0 5.49e-01 85.7% 76.9%
5060354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 5.18e-01 80.4% 73.8%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 53.0 4.64e-01 78.6% 51.8%
4987329 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.72 57.0 4.95e-01 85.7% 58.8%
5055780 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 49.0 5.49e-01 73.2% 100.0%
3968886 101.1.1.77 alpha arrays › HTH › HTH › Three-helical HTH › HTH_50 0.70 55.0 5.28e-01 85.7% 73.8%
4941224 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 4.72e-01 83.9% 62.5%
4518420 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.57 49.0 4.66e-01 96.4% 89.2%
D3 medium residues 129-214
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 43.0 5.62e-01 88.4% 91.7%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.81 46.0 4.39e-01 90.7% 48.5%
1sfuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 40.0 4.42e-01 87.2% 68.6%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 44.0 5.07e-01 98.8% 96.7%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 36.0 3.95e-01 87.2% 63.8%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 37.0 4.02e-01 90.7% 65.8%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 37.0 4.09e-01 89.5% 68.6%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 34.0 4.32e-01 84.9% 100.0%
3bniB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 45.0 3.74e-01 93.0% 66.1%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.13e-01 82.6% 40.4%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.59e-01 94.2% 66.7%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 38.0 2.79e-01 93.0% 25.0%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 41.0 3.31e-01 89.5% 66.0%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 42.0 3.31e-01 91.9% 59.6%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.27e-01 79.1% 51.1%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 45.0 3.73e-01 98.8% 93.5%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.27e-01 100.0% 51.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030004 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.89 48.0 4.37e-01 90.7% 42.7%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.89 53.0 4.61e-01 94.2% 43.3%
5003376 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 48.0 4.74e-01 90.7% 55.6%
4952541 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 47.0 4.47e-01 90.7% 50.0%
4391758 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.80 47.0 4.53e-01 90.7% 52.6%
4927758 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 44.0 4.85e-01 82.6% 67.1%
4934191 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.76 45.0 3.87e-01 89.5% 38.5%
3738604 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 45.0 4.21e-01 93.0% 50.5%
5053746 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 44.0 4.73e-01 94.2% 72.0%
5051680 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 45.0 4.68e-01 98.8% 70.0%
4359947 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.70 37.0 4.24e-01 87.2% 69.2%
4961693 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.70 40.0 4.13e-01 91.9% 60.0%
3512259 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.70 47.0 4.40e-01 88.4% 57.1%
4342882 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.69 37.0 4.36e-01 87.2% 75.0%
3980686 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.69 37.0 4.67e-01 87.2% 90.0%
5013438 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.68 38.0 4.45e-01 87.2% 78.3%
5045749 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.68 40.0 4.47e-01 88.4% 75.4%
4962818 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.67 41.0 4.25e-01 97.7% 65.0%
5050966 101.1.11.2 alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.67 42.0 4.13e-01 95.3% 57.9%
3986709 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 36.0 4.20e-01 87.2% 75.0%
5074942 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.66 42.0 4.40e-01 94.2% 72.0%
4994133 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.66 44.0 4.46e-01 97.7% 69.4%
4530329 101.1.8.14 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.66 36.0 4.21e-01 87.2% 76.7%
1095020 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.66 37.0 4.09e-01 89.5% 68.6%
5050883 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.55e-01 84.9% 70.4%
4659432 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 35.0 3.76e-01 88.4% 64.0%
5072014 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.61 41.0 4.34e-01 93.0% 77.3%
3494091 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 39.0 3.81e-01 91.9% 58.9%
3983992 101.1.4.20 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.59 35.0 3.65e-01 89.5% 62.5%
4007629 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.59 36.0 3.86e-01 91.9% 72.9%
5043242 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.57 46.0 4.74e-01 91.9% 88.1%
5053927 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.56 39.0 3.30e-01 72.1% 67.1%
3968724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 37.0 3.87e-01 93.0% 78.7%
3291620 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.53 36.0 3.98e-01 74.4% 85.7%
5030545 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.53 41.0 3.51e-01 81.4% 85.7%
4954674 101.31.1.0 alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit 0.52 45.0 4.26e-01 100.0% 92.4%
4928584 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.52 46.0 3.43e-01 100.0% 49.8%
None 0.52 45.0 2.92e-01 98.8% 23.5%
D4 medium residues 226-301
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mlfE00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 45.0 4.39e-01 75.0% 98.8%
3bcgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 41.0 2.92e-01 85.5% 24.6%
2wuiA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 39.0 2.81e-01 81.6% 25.0%
2nx4C00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 48.0 3.58e-01 86.8% 71.7%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.20e-01 78.9% 100.0%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 44.0 3.30e-01 80.3% 67.0%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.58 44.0 3.75e-01 81.6% 86.5%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.52e-01 76.3% 65.4%
5dajD00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.07e-01 75.0% 42.7%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 50.0 3.77e-01 100.0% 68.5%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.74e-01 78.9% 63.8%
3nxcA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 45.0 3.46e-01 88.2% 68.9%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 43.0 3.22e-01 82.9% 41.0%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.43e-01 93.4% 75.2%
2g3bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 44.0 3.35e-01 88.2% 71.1%
2gfnA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.36e-01 89.5% 68.8%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.46e-01 92.1% 70.8%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 41.0 4.02e-01 84.2% 90.8%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.88e-01 88.2% 68.2%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 44.0 3.44e-01 92.1% 75.1%
3qkxB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.29e-01 88.2% 69.6%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.06e-01 81.6% 38.7%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 41.0 3.64e-01 85.5% 95.5%
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 43.0 3.20e-01 90.8% 68.8%
3f1bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 43.0 3.31e-01 93.4% 71.6%
3vibA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 3.27e-01 93.4% 72.5%
2guhB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 39.0 3.04e-01 86.8% 70.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1879843 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 46.0 4.25e-01 88.2% 75.8%
4974140 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 40.0 3.66e-01 72.4% 74.0%
4942942 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 40.0 4.03e-01 85.5% 72.5%
3957236 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.14e-01 89.5% 81.0%
3282753 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.55 47.0 4.35e-01 94.7% 90.0%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.55 38.0 3.49e-01 72.4% 77.1%
3502246 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 45.0 4.01e-01 100.0% 75.7%
144314 101.1.4.15 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › SpoIIID 0.53 40.0 3.84e-01 86.8% 79.6%
3693312 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 31.0 3.52e-01 72.4% 75.0%
142606 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.52 42.0 4.22e-01 90.8% 100.0%
4160122 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.51 35.0 2.89e-01 73.7% 36.0%
3290890 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.51 41.0 4.08e-01 89.5% 95.0%
3420347 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.50 40.0 3.84e-01 89.5% 75.3%