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JN698994.1__AER47633.1__DS6A_79__00079

Bact-Vir

JN698994.1__AER47633.1__DS6A_79__00079

Identity

Accession:
JN698994 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hnatkovirus› Mycobacterium_phage_DS6A

TaxID: 45764

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 47.0 3.79e-01 73.0% 77.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 54.0 4.42e-01 90.5% 92.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.66 45.0 4.00e-01 81.0% 49.5%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 55.0 4.39e-01 100.0% 47.7%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 47.0 4.04e-01 81.0% 79.8%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 50.0 4.13e-01 92.1% 83.7%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 52.0 4.26e-01 93.7% 84.7%
1x6cA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 48.0 3.95e-01 85.7% 64.4%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 48.0 4.45e-01 85.7% 66.7%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.60 39.0 3.42e-01 71.4% 42.4%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 49.0 4.98e-01 92.1% 98.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.48e-01 92.1% 74.7%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 49.0 3.49e-01 96.8% 47.0%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 3.78e-01 90.5% 89.8%
1coyA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.58 39.0 3.03e-01 73.0% 29.0%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.58 49.0 3.91e-01 100.0% 64.2%
2f1xB00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.57 40.0 3.14e-01 74.6% 61.3%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 48.0 3.91e-01 98.4% 76.7%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.57 46.0 3.65e-01 93.7% 44.4%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 46.0 3.51e-01 93.7% 39.8%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 42.0 3.51e-01 92.1% 43.2%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 45.0 3.11e-01 90.5% 93.3%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 44.0 3.79e-01 87.3% 66.7%
5z3gZ01 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 39.0 3.31e-01 92.1% 40.3%
3c65A00 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.55 47.0 3.62e-01 98.4% 41.7%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 45.0 3.45e-01 93.7% 83.9%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 41.0 3.50e-01 85.7% 72.6%
1b9lA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 42.0 3.54e-01 90.5% 97.5%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 4.01e-01 100.0% 82.7%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 2.98e-01 96.8% 65.1%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.54 38.0 3.36e-01 76.2% 55.7%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.20e-01 100.0% 46.4%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 37.0 3.25e-01 77.8% 73.1%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 2.73e-01 85.7% 69.5%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 42.0 3.80e-01 93.7% 64.0%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 37.0 2.49e-01 77.8% 61.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 3.28e-01 100.0% 49.0%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.38e-01 92.1% 79.5%
3vr0A00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.52 41.0 2.88e-01 93.7% 73.4%
3g8wB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.07e-01 88.9% 97.6%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.51 40.0 3.40e-01 95.2% 63.2%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 43.0 3.35e-01 98.4% 68.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3808110 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 55.0 4.14e-01 82.5% 60.7%
3912173 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.70 48.0 4.43e-01 74.6% 56.2%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.68 45.0 3.78e-01 71.4% 39.8%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 56.0 5.12e-01 100.0% 70.6%
4308581 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.67 52.0 4.22e-01 92.1% 44.2%
3734989 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 46.0 3.09e-01 73.0% 20.8%
3621723 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.65 52.0 3.47e-01 92.1% 22.0%
3740252 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.65 44.0 3.62e-01 73.0% 38.3%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 53.0 4.36e-01 95.2% 90.4%
4050042 4.1.1.441 ↗ beta barrels › SH3 › SH3 › SH3 › PF26332 0.64 50.0 4.68e-01 87.3% 68.8%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.64 51.0 4.13e-01 92.1% 44.8%
3658323 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.64 50.0 4.28e-01 87.3% 53.3%
6289 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 55.0 4.39e-01 100.0% 47.7%
3537881 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 52.0 3.88e-01 92.1% 72.1%
3965228 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 49.0 4.27e-01 84.1% 72.6%
3905709 243.3.1.22 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cyto_heme_lyase 0.63 49.0 3.53e-01 84.1% 31.1%
4619347 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 3.74e-01 76.2% 57.4%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.92e-01 96.8% 80.0%
3987365 896.1.1.4 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.63 49.0 4.60e-01 92.1% 68.8%
3941717 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 43.0 3.92e-01 79.4% 53.4%
4304407 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 43.0 3.41e-01 74.6% 37.8%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 47.0 4.29e-01 88.9% 76.7%
3439646 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.60 49.0 4.22e-01 92.1% 55.2%
3854465 283.2.1.8 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.60 41.0 3.35e-01 71.4% 37.5%
3634274 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 45.0 3.82e-01 82.5% 75.5%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 54.0 3.84e-01 100.0% 59.5%
3694763 375.1.1.222 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.60 41.0 3.26e-01 71.4% 34.6%
3183677 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.60 42.0 3.47e-01 71.4% 40.9%
3244742 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 46.0 3.00e-01 85.7% 19.0%
3593378 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 52.0 4.20e-01 98.4% 74.2%
4393617 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 51.0 4.05e-01 96.8% 50.0%
3733008 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.59 48.0 3.17e-01 96.8% 27.5%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 41.0 4.35e-01 76.2% 83.6%
3926984 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 44.0 3.23e-01 85.7% 27.0%
3550844 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 48.0 3.72e-01 96.8% 64.4%
3473974 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.59 49.0 3.80e-01 95.2% 87.6%
3445028 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 49.0 4.58e-01 96.8% 81.2%
3894481 277.1.1.5 ↗ a+b two layers › PX domain › PX domain › PX domain › Vps5 0.58 46.0 2.91e-01 90.5% 31.4%
3778242 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 49.0 3.22e-01 100.0% 50.9%
4124146 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 3.70e-01 95.2% 85.2%
3882182 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.58 49.0 3.76e-01 90.5% 57.7%
3614177 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 49.0 3.78e-01 98.4% 72.7%
2607438 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.57 42.0 3.97e-01 77.8% 77.3%
3711707 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 49.0 3.83e-01 98.4% 75.2%
3488379 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 47.0 3.68e-01 88.9% 70.8%
3698360 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 46.0 3.52e-01 96.8% 63.5%
5037168 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.56 43.0 3.65e-01 92.1% 79.2%
3841771 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 45.0 3.57e-01 96.8% 70.7%
3592742 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 43.0 3.91e-01 88.9% 73.3%
3439312 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.55 42.0 3.85e-01 92.1% 61.1%
3741279 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 3.62e-01 96.8% 77.1%
4028630 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.77e-01 81.0% 69.2%
3705745 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.55 44.0 3.65e-01 95.2% 56.9%
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.55 42.0 4.04e-01 95.2% 71.2%
4529819 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 46.0 3.69e-01 98.4% 91.1%
4407986 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 36.0 2.89e-01 96.8% 31.7%
3183690 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.58e-01 100.0% 40.7%
3580096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 3.62e-01 95.2% 83.2%
3913017 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 43.0 3.50e-01 88.9% 71.2%
4490823 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.53 44.0 3.26e-01 93.7% 48.0%
3301111 331.3.1.25 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.52 42.0 3.35e-01 90.5% 46.7%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.43e-01 100.0% 47.5%
4929294 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 43.0 3.24e-01 100.0% 37.8%
4642685 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 38.0 3.23e-01 92.1% 43.2%
3738978 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 45.0 3.50e-01 100.0% 44.3%
4940634 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 45.0 3.47e-01 100.0% 63.4%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.51 39.0 3.71e-01 98.4% 71.2%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.49e-01 96.8% 55.7%
4024578 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.50 41.0 3.23e-01 96.8% 67.1%
4572085 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.50 39.0 3.33e-01 96.8% 48.3%