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JN698994.1__AER47646.1__DS6A_92__00092
Bact-VirJN698994.1__AER47646.1__DS6A_92__00092
Identity
- Accession:
- JN698994 ↗
- Kingdom:
- phage
Quality
81.0
mean pLDDT
Taxonomy
TaxID: 45764
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-66
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.79 | 72.0 | 5.01e-01 | 98.3% | 74.3% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.78 | 71.0 | 4.94e-01 | 98.3% | 73.3% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.77 | 70.0 | 5.23e-01 | 98.3% | 81.5% |
| 1dowA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.77 | 69.0 | 4.69e-01 | 100.0% | 36.6% |
| 1dpsA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.76 | 68.0 | 4.88e-01 | 98.3% | 76.1% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 62.0 | 4.22e-01 | 100.0% | 34.8% |
| 1rtwB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.71 | 62.0 | 4.26e-01 | 98.3% | 59.1% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 62.0 | 4.60e-01 | 100.0% | 58.0% |
| 8anqA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.71 | 63.0 | 4.23e-01 | 100.0% | 90.6% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.70 | 61.0 | 4.69e-01 | 100.0% | 57.6% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 48.0 | 3.26e-01 | 71.2% | 21.7% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 61.0 | 4.53e-01 | 98.3% | 84.8% |
| 1jfiB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.68 | 52.0 | 3.94e-01 | 81.4% | 55.6% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.67 | 54.0 | 4.47e-01 | 89.8% | 88.2% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.67 | 60.0 | 3.94e-01 | 100.0% | 85.7% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 54.0 | 5.08e-01 | 98.3% | 86.7% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.63 | 56.0 | 4.46e-01 | 100.0% | 71.7% |
| 6gwuD00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.63 | 54.0 | 3.67e-01 | 93.2% | 34.2% |
| 1u8vA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.60 | 46.0 | 3.58e-01 | 86.4% | 49.0% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 52.0 | 4.29e-01 | 100.0% | 56.8% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.59 | 38.0 | 3.17e-01 | 76.3% | 36.4% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 52.0 | 4.45e-01 | 100.0% | 66.7% |
| 3qqaA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 45.0 | 3.61e-01 | 93.2% | 80.1% |
| 3m6aA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.46e-01 | 100.0% | 35.3% |
| 5c9gA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.55 | 39.0 | 3.99e-01 | 78.0% | 89.5% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.55 | 48.0 | 4.30e-01 | 98.3% | 80.0% |
| 3gmfA02 | 1.10.40.110 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.54 | 44.0 | 3.84e-01 | 100.0% | 75.7% |
| 2c0gA02 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.53 | 43.0 | 3.55e-01 | 89.8% | 85.8% |
| 5kjpA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.51 | 36.0 | 3.65e-01 | 78.0% | 89.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3789449 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.80 | 54.0 | 4.61e-01 | 71.2% | 44.2% |
| 3288395 | 150.1.1.12 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF4439 | 0.78 | 71.0 | 5.30e-01 | 98.3% | 83.0% |
| 2035448 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.77 | 69.0 | 4.69e-01 | 100.0% | 36.6% |
| 3784116 | 150.1.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › COQ7 | 0.77 | 69.0 | 4.60e-01 | 98.3% | 73.3% |
| 3951159 | 150.1.1.12 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF4439 | 0.77 | 69.0 | 5.08e-01 | 98.3% | 75.9% |
| 3937962 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.76 | 55.0 | 3.91e-01 | 74.6% | 47.5% |
| 4194775 | 150.1.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › COQ7 | 0.76 | 69.0 | 4.68e-01 | 98.3% | 64.1% |
| 3927737 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.76 | 52.0 | 4.39e-01 | 71.2% | 45.3% |
| 3940859 | 150.1.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › COQ7 | 0.76 | 68.0 | 4.72e-01 | 98.3% | 69.2% |
| 4630721 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.76 | 62.0 | 5.71e-01 | 88.1% | 94.7% |
| 4068294 | 150.1.2.9 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ald_deCOase | 0.75 | 67.0 | 4.41e-01 | 100.0% | 51.5% |
| 3701651 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.75 | 67.0 | 5.61e-01 | 100.0% | 67.7% |
| 3768618 | 568.1.1.1 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › COX6B | 0.74 | 61.0 | 5.61e-01 | 88.1% | 94.7% |
| 5007234 | 601.7.1.23 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF294_C | 0.74 | 65.0 | 4.98e-01 | 100.0% | 70.0% |
| 3420489 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.74 | 58.0 | 5.50e-01 | 84.7% | 84.3% |
| 4945550 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.73 | 64.0 | 4.62e-01 | 98.3% | 53.9% |
| 3474500 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.72 | 62.0 | 5.57e-01 | 100.0% | 92.9% |
| 3829728 | 601.17.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen | 0.72 | 62.0 | 4.08e-01 | 100.0% | 26.5% |
| 3966 | 150.1.2.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4 | 0.71 | 62.0 | 4.27e-01 | 98.3% | 59.7% |
| 3770225 | 6026.1.1.18 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › PF31011 | 0.71 | 54.0 | 5.26e-01 | 81.4% | 93.8% |
| 4344497 | 3896.1.2.1 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase › CarS-like | 0.70 | 61.0 | 4.45e-01 | 96.6% | 81.2% |
| None | — | 0.69 | 59.0 | 4.34e-01 | 96.6% | 80.0% | |
| 3187418 | 601.1.2.149 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF30922 | 0.69 | 60.0 | 4.83e-01 | 98.3% | 87.8% |
| 3734862 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.67 | 50.0 | 2.96e-01 | 81.4% | 14.5% |
| 3929741 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.66 | 53.0 | 4.97e-01 | 86.4% | 81.4% |
| 3811999 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.63 | 56.0 | 4.30e-01 | 98.3% | 52.3% |
| 3718204 | 148.1.3.12 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_8 | 0.62 | 53.0 | 4.01e-01 | 96.6% | 45.5% |
| 3996177 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.61 | 53.0 | 4.66e-01 | 94.9% | 73.8% |
| 4597023 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.60 | 52.0 | 4.78e-01 | 94.9% | 78.7% |
| 3036200 | 108.2.1.0 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins | 0.59 | 50.0 | 4.02e-01 | 100.0% | 66.1% |
| 2075033 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.58 | 50.0 | 4.56e-01 | 96.6% | 88.6% |
| 3361577 | 109.4.1.601 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PLU-1 | 0.56 | 46.0 | 3.96e-01 | 94.9% | 71.0% |
| 3959290 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.55 | 48.0 | 3.13e-01 | 100.0% | 40.1% |
| 4540264 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.53 | 40.0 | 3.07e-01 | 83.1% | 95.3% |