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JN698995.1__AER47693.1__DORI_44__00044

Bact-Vir

JN698995.1__AER47693.1__DORI_44__00044

Identity

Accession:
JN698995 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-95
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24238.2 best CDGP 71.3 1.20e-19 93.1% 98.5%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.71 45.0 4.91e-01 73.6% 78.3%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 59.0 5.06e-01 97.2% 96.6%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.68 51.0 3.40e-01 80.6% 38.2%
4xa2A01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.68 48.0 4.10e-01 73.6% 77.9%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 48.0 4.40e-01 75.0% 97.8%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 4.18e-01 72.2% 81.9%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.65 55.0 4.46e-01 97.2% 96.6%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 52.0 3.94e-01 88.9% 94.9%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 47.0 3.75e-01 77.8% 42.1%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 55.0 4.22e-01 98.6% 89.3%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.64 48.0 4.06e-01 80.6% 62.3%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 54.0 4.24e-01 97.2% 98.8%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.63 44.0 4.03e-01 73.6% 86.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 43.0 4.06e-01 72.2% 58.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.91e-01 80.6% 84.1%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.63 50.0 4.31e-01 84.7% 65.1%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 50.0 3.61e-01 88.9% 79.5%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.62 48.0 3.29e-01 84.7% 41.0%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 50.0 3.76e-01 87.5% 94.4%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.62 48.0 3.90e-01 81.9% 53.3%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.62 48.0 3.70e-01 81.9% 61.8%
2peeB02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 49.0 4.03e-01 86.1% 76.3%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 51.0 3.99e-01 91.7% 78.3%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 43.0 3.67e-01 75.0% 86.6%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 48.0 4.09e-01 86.1% 99.2%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 44.0 3.78e-01 79.2% 83.2%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 43.0 2.86e-01 73.6% 89.6%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 4.07e-01 86.1% 80.9%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.60 43.0 3.51e-01 76.4% 44.6%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.79e-01 93.1% 68.0%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 47.0 3.81e-01 86.1% 78.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 41.0 3.71e-01 73.6% 52.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 41.0 2.86e-01 73.6% 91.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 47.0 3.69e-01 86.1% 63.1%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 47.0 3.09e-01 87.5% 53.6%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 49.0 4.14e-01 90.3% 97.4%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.99e-01 86.1% 57.3%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.28e-01 72.2% 37.6%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 45.0 3.74e-01 84.7% 72.5%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 46.0 3.68e-01 87.5% 74.7%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.54e-01 81.9% 77.5%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.63e-01 76.4% 73.4%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.57 46.0 3.18e-01 88.9% 88.7%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 40.0 3.51e-01 76.4% 83.8%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.56 46.0 3.52e-01 90.3% 49.7%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 4.17e-01 80.6% 82.9%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 44.0 3.37e-01 87.5% 88.0%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.74e-01 84.7% 69.7%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.97e-01 98.6% 92.9%
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.54 42.0 3.78e-01 86.1% 95.2%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.82e-01 83.3% 88.9%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.42e-01 81.9% 90.0%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.54e-01 77.8% 91.2%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.59e-01 86.1% 100.0%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 44.0 2.89e-01 100.0% 81.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093191 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.72 47.0 4.11e-01 72.2% 46.2%
5014253 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 52.0 5.26e-01 98.6% 80.0%
3279448 9.1.1.17 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.68 49.0 3.97e-01 75.0% 81.2%
3380843 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 50.0 3.86e-01 79.2% 39.4%
4011346 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.67 47.0 4.51e-01 75.0% 74.1%
3615728 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.66 54.0 3.33e-01 88.9% 43.7%
4003483 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.66 50.0 3.19e-01 80.6% 25.4%
3192104 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.66 51.0 4.27e-01 84.7% 67.2%
3881009 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.65 45.0 3.88e-01 72.2% 60.0%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 48.0 4.14e-01 77.8% 51.8%
135591 265.1.1.4 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat 0.64 48.0 4.06e-01 80.6% 62.3%
3167073 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 44.0 3.43e-01 73.6% 45.0%
1346676 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.63 50.0 4.31e-01 84.7% 65.1%
3962078 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.63 48.0 3.69e-01 81.9% 72.1%
5064859 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 45.0 3.12e-01 76.4% 36.3%
5040130 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 47.0 4.43e-01 81.9% 83.3%
5075730 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.62 50.0 4.40e-01 91.7% 79.1%
9393 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.61 45.0 3.09e-01 77.8% 35.0%
4491189 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.61 47.0 4.12e-01 81.9% 64.8%
3597494 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 49.0 3.30e-01 90.3% 57.9%
3252995 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.61 48.0 3.41e-01 86.1% 90.2%
4017561 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 49.0 3.12e-01 88.9% 50.7%
4423905 4051.1.1.8 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › PF26204 0.60 47.0 3.26e-01 81.9% 29.5%
4025089 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.60 52.0 3.36e-01 98.6% 38.0%
3189872 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 41.0 3.86e-01 73.6% 100.0%
3632595 12.1.1.23 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.58 43.0 3.55e-01 77.8% 93.8%
3610630 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.58 48.0 3.30e-01 88.9% 84.7%
3979569 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 52.0 4.54e-01 100.0% 99.1%
3905481 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.58 42.0 3.15e-01 79.2% 30.3%
3842596 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.03e-01 93.1% 30.4%
3365468 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.57 46.0 3.32e-01 93.1% 94.5%
3725129 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.56 47.0 3.67e-01 91.7% 61.3%
3770608 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.56 43.0 3.67e-01 83.3% 90.8%
3504741 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.56e-01 81.9% 88.8%
3416606 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.56 48.0 3.55e-01 100.0% 35.9%
3885583 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.56 41.0 3.58e-01 80.6% 81.7%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 40.0 3.86e-01 77.8% 72.9%
3614143 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 48.0 4.07e-01 100.0% 74.2%
3637624 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 43.0 3.69e-01 86.1% 63.3%
3585491 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 47.0 2.97e-01 98.6% 18.0%
3474593 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 42.0 3.31e-01 84.7% 50.6%
3323887 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.54 43.0 3.05e-01 94.4% 86.1%
3401290 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 42.0 3.59e-01 84.7% 55.8%
3876863 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 48.0 4.05e-01 100.0% 85.0%
5038973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.01e-01 100.0% 83.7%
3266323 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 43.0 3.70e-01 88.9% 93.3%
1590 11.1.1.236 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.53 40.0 3.57e-01 81.9% 93.3%
4447644 2004.1.1.514 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.53 47.0 2.94e-01 100.0% 92.2%
3667413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.76e-01 76.4% 94.7%
3995220 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 3.62e-01 100.0% 78.8%
4028705 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 40.0 3.44e-01 84.7% 60.8%
1147819 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.52 39.0 3.65e-01 87.5% 71.7%
3253996 5.1.5.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.51 45.0 2.88e-01 98.6% 34.9%
4407693 2004.1.1.525 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.51 45.0 2.91e-01 100.0% 91.6%
4108862 2004.1.1.525 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.51 45.0 2.83e-01 100.0% 91.7%
3798523 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 40.0 3.88e-01 87.5% 95.0%