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JN698995.1__AER47740.1__DORI_91__00091

Bact-Vir

JN698995.1__AER47740.1__DORI_91__00091

Identity

Accession:
JN698995 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_phage_Dori

TaxID: 1089121

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-85
PDB
Domain cluster: rep: OR159659.1__WKW85516.1__SEA_REYNAULD_64__00064__D155-228
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.67 58.0 5.53e-01 95.0% 81.7%
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 28.0 3.25e-01 93.8% 55.9%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.38e-01 90.0% 93.5%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.59 49.0 4.09e-01 92.5% 89.4%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 48.0 3.63e-01 93.8% 89.7%
7w0aA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.57 48.0 4.20e-01 95.0% 90.4%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 33.0 3.61e-01 83.7% 71.2%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.95e-01 93.8% 67.9%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 4.43e-01 88.7% 85.7%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.48e-01 92.5% 49.6%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.62e-01 87.5% 98.5%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.60e-01 81.2% 83.5%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 36.0 3.30e-01 82.5% 51.4%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.52 46.0 4.24e-01 100.0% 79.4%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.52 38.0 3.06e-01 77.5% 82.7%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.33e-01 77.5% 77.1%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 38.0 3.86e-01 81.2% 88.9%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 3.41e-01 80.0% 95.8%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.59e-01 87.5% 91.1%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.16e-01 77.5% 75.4%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.35e-01 77.5% 93.0%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 42.0 3.17e-01 88.7% 93.1%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.54e-01 90.0% 73.3%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.50 37.0 3.32e-01 83.7% 53.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968862 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 39.0 4.74e-01 76.2% 100.0%
4105352 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.64 44.0 3.05e-01 71.2% 27.0%
3167022 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.63 50.0 3.07e-01 86.3% 17.6%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.62 49.0 3.12e-01 85.0% 18.7%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 35.0 3.27e-01 77.5% 43.3%
3646843 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 51.0 3.30e-01 88.7% 28.8%
3594576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 4.32e-01 85.0% 78.2%
3633076 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.61 42.0 3.83e-01 72.5% 54.3%
3680747 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 2.88e-01 83.7% 20.0%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 50.0 4.37e-01 96.2% 83.2%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.44e-01 98.8% 88.8%
3717097 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 46.0 2.83e-01 87.5% 20.0%
3184389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 3.73e-01 95.0% 65.7%
3197280 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 3.11e-01 95.0% 25.4%
3197575 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.55 38.0 3.67e-01 71.2% 73.3%
4438077 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.55 39.0 2.49e-01 75.0% 17.1%
135609 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 40.0 3.43e-01 77.5% 86.7%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.48e-01 100.0% 92.6%
1396465 12.1.1.43 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 0.54 46.0 4.11e-01 96.2% 97.5%
3272662 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 42.0 2.91e-01 86.3% 59.0%
3368394 4325.1.1.11 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.54 36.0 3.50e-01 71.2% 74.7%
4438762 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 42.0 4.13e-01 87.5% 85.9%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.53 40.0 4.11e-01 91.3% 88.0%
4995161 7504.1.1.2 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.53 43.0 3.40e-01 88.7% 91.2%
3391463 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.53 46.0 4.03e-01 100.0% 86.4%
3438528 5.1.4.506 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_AT5G49610-like 0.53 42.0 2.85e-01 90.0% 30.0%
4978131 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.53 40.0 2.84e-01 83.7% 88.7%
3941958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 4.25e-01 93.8% 87.8%
4420721 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.53 44.0 2.93e-01 95.0% 40.0%
163477 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.52 38.0 3.38e-01 76.2% 83.3%
3481723 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 44.0 3.85e-01 91.3% 80.9%
3247792 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 38.0 3.35e-01 78.8% 83.3%
3277369 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 45.0 4.27e-01 100.0% 89.5%
3925547 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.51 35.0 2.74e-01 72.5% 35.4%
3300222 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 36.0 2.31e-01 72.5% 89.9%
3460838 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.51 36.0 2.41e-01 72.5% 24.3%
3599752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.74e-01 95.0% 35.3%
5052888 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 42.0 3.75e-01 97.5% 89.6%
3795915 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.50 38.0 3.58e-01 86.3% 65.0%
5050338 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 45.0 3.92e-01 100.0% 77.5%
3509647 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.50 41.0 2.82e-01 93.8% 73.3%
4398068 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.50 42.0 2.77e-01 95.0% 38.6%