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JN700520.2__AFD22278.1__X__00065

Bact-Vir

JN700520.2__AFD22278.1__X__00065

Identity

Accession:
JN700520 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_StB12

TaxID: 1147042

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-77
PDB
Domain cluster: rep: PP034390.1__WRW34715.1__CF5_0062__00062__D49-111
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 38.7 1.60e-09 98.7% 75.3%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 70.0 5.17e-01 100.0% 45.9%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 62.0 5.61e-01 100.0% 66.0%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 27.0 3.14e-01 98.6% 74.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034059 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.96 92.0 7.09e-01 100.0% 51.0%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.86 81.0 6.46e-01 100.0% 54.8%
4796282 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.86 80.0 6.89e-01 100.0% 68.5%
4034057 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.74 63.0 5.60e-01 100.0% 65.7%
3936430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 3.93e-01 79.7% 61.3%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 33.0 3.52e-01 71.6% 60.0%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.60 35.0 3.84e-01 74.3% 71.2%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.60 34.0 3.71e-01 71.6% 67.2%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 33.0 3.58e-01 70.3% 65.0%
3622052 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 38.0 3.69e-01 81.1% 56.5%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.60 35.0 3.83e-01 70.3% 72.4%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.61e-01 75.7% 61.4%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 39.0 3.86e-01 97.3% 63.7%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 38.0 3.67e-01 81.1% 60.0%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 39.0 3.67e-01 81.1% 60.0%
3927214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.04e-01 94.6% 75.8%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 38.0 3.67e-01 97.3% 64.7%
3854862 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 37.0 3.52e-01 97.3% 58.9%
3561707 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 40.0 3.68e-01 83.8% 61.0%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.59e-01 97.3% 65.9%
3518844 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 36.0 3.55e-01 97.3% 65.9%
3774108 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 38.0 3.52e-01 94.6% 63.2%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 34.0 3.32e-01 71.6% 64.7%