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JN700521.1__AFD22314.1__X__00027

Bact-Vir

JN700521.1__AFD22314.1__X__00027

Identity

Accession:
JN700521 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_StB20

TaxID: 1147043

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-56
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.56e-01 91.7% 31.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.63e-01 100.0% 66.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 46.0 4.75e-01 93.8% 82.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 5.18e-01 97.9% 93.6%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.58 38.0 3.68e-01 83.3% 54.5%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.57 37.0 3.12e-01 77.1% 37.6%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.11e-01 100.0% 68.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.30e-01 100.0% 73.6%
6ieoA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 45.0 3.63e-01 91.7% 52.1%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 43.0 3.03e-01 89.6% 39.4%
4w1vA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 47.0 3.21e-01 93.8% 63.3%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.55 35.0 3.61e-01 85.4% 65.2%
1te0A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 44.0 3.50e-01 91.7% 50.0%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 2.83e-01 95.8% 19.0%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.54 37.0 3.72e-01 91.7% 72.5%
7co7D03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 44.0 3.53e-01 91.7% 52.1%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.14e-01 97.9% 92.3%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 42.0 3.34e-01 100.0% 78.2%
4yo1A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 43.0 3.47e-01 91.7% 51.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.53 47.0 4.36e-01 100.0% 80.0%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 43.0 3.43e-01 95.8% 53.8%
6s6yD02 3.30.70.520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.05e-01 93.8% 44.4%
2jaeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 3.08e-01 100.0% 36.2%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.67e-01 95.8% 93.4%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 40.0 2.83e-01 93.8% 77.2%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 41.0 3.44e-01 93.8% 63.0%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.64e-01 100.0% 34.5%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.13e-01 100.0% 37.8%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 3.44e-01 100.0% 46.9%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.33e-01 100.0% 56.2%
3topA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 2.71e-01 79.2% 51.5%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.28e-01 100.0% 78.7%
6iccA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 43.0 3.63e-01 100.0% 74.4%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 39.0 3.76e-01 89.6% 100.0%
1q8iA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.50 36.0 2.44e-01 87.5% 18.7%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 36.0 2.87e-01 83.3% 35.5%
2rjqA02 3.40.1620.60 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.50 33.0 2.92e-01 87.5% 43.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2534584 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.68 42.0 4.05e-01 81.2% 52.6%
4321479 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.64 56.0 3.98e-01 100.0% 55.2%
5011550 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 42.0 3.79e-01 100.0% 47.8%
5058103 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.71e-01 100.0% 66.2%
5029655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.07e-01 100.0% 78.3%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.62 54.0 5.09e-01 100.0% 79.7%
3721850 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.61 46.0 3.00e-01 91.7% 18.6%
5011394 4.1.3.0 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP 0.60 48.0 4.39e-01 95.8% 66.2%
4628460 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.09e-01 100.0% 60.0%
4098530 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 45.0 2.99e-01 100.0% 19.5%
4023296 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.59 44.0 3.93e-01 91.7% 55.7%
4131560 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.58 47.0 3.49e-01 89.6% 69.2%
3578331 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.57 41.0 3.76e-01 91.7% 54.3%
3467905 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.77e-01 100.0% 94.5%
3711372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 3.21e-01 100.0% 65.0%
3390744 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.56 34.0 2.81e-01 81.2% 32.9%
3595978 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 2.56e-01 89.6% 24.3%
4930436 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.55 44.0 3.42e-01 91.7% 38.3%
3813009 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.55 40.0 2.38e-01 77.1% 51.9%
3964560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.03e-01 100.0% 64.3%
3929033 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.55 39.0 3.41e-01 91.7% 47.5%
4407594 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 47.0 3.09e-01 100.0% 40.4%
3598871 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.54 44.0 3.53e-01 91.7% 51.5%
3979711 252.2.1.6 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.54 42.0 3.78e-01 83.3% 66.2%
5022351 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 42.0 2.90e-01 91.7% 22.6%
3284184 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.54 45.0 3.59e-01 91.7% 51.6%
4024483 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.54 44.0 3.64e-01 91.7% 55.1%
4231650 377.2.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › zf-FPG_IleRS 0.54 34.0 3.41e-01 72.9% 62.0%
4928855 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.54 44.0 3.37e-01 91.7% 57.4%
3604095 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.54 45.0 3.60e-01 100.0% 78.1%
4953724 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.36e-01 89.6% 96.2%
5059800 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 44.0 3.92e-01 91.7% 71.4%
3166282 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.53 44.0 3.65e-01 91.7% 58.8%
3465409 207.1.1.142 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6, LRR_8 0.53 38.0 2.25e-01 77.1% 40.0%
3811308 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.53 46.0 3.70e-01 100.0% 66.3%
3225764 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.52 42.0 4.00e-01 97.9% 91.7%
3715750 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 42.0 2.42e-01 91.7% 51.6%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 42.0 3.19e-01 95.8% 48.0%
3356078 109.4.1.933 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Trm732 0.51 41.0 2.66e-01 93.8% 24.5%
5017398 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.51 45.0 3.67e-01 100.0% 66.7%
3700452 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.15e-01 100.0% 56.4%
3712836 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.89e-01 100.0% 90.7%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.50 39.0 2.51e-01 95.8% 41.4%
1159345 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.50 36.0 3.42e-01 79.2% 86.7%