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JN880423.1__AFJ21488.1__X__00033
Bact-VirJN880423.1__AFJ21488.1__X__00033
Identity
- Accession:
- JN880423 ↗
- Kingdom:
- phage
Quality
68.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 85-209
Domain cluster:
representative
D2
high
residues 281-419
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o7pA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.65 | 46.0 | 3.94e-01 | 71.2% | 75.7% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 60.0 | 4.69e-01 | 100.0% | 49.8% |
| 4ackB00 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.60 | 51.0 | 4.97e-01 | 90.6% | 88.2% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.57 | 35.0 | 3.98e-01 | 95.7% | 81.4% |
| 4y6cA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 41.0 | 3.62e-01 | 100.0% | 48.6% |
| 8ex5A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 42.0 | 3.60e-01 | 78.4% | 66.2% |
| 5x56B00 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.56 | 35.0 | 4.00e-01 | 95.7% | 83.8% |
| 4abnA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 49.0 | 3.92e-01 | 96.4% | 49.5% |
| 4p3fA00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.55 | 46.0 | 4.14e-01 | 100.0% | 64.8% |
| 1ya0A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 46.0 | 4.03e-01 | 91.4% | 72.3% |
| 3qwwA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 39.0 | 3.52e-01 | 100.0% | 53.9% |
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 32.0 | 3.31e-01 | 100.0% | 60.7% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 29.0 | 3.78e-01 | 99.3% | 98.7% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.53 | 40.0 | 3.89e-01 | 79.9% | 89.7% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.52 | 44.0 | 3.66e-01 | 92.8% | 87.2% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.52 | 32.0 | 3.70e-01 | 91.4% | 85.9% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.51 | 35.0 | 3.90e-01 | 84.2% | 87.5% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.51 | 40.0 | 4.18e-01 | 88.5% | 88.5% |
| 2nwbA02 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 46.0 | 3.88e-01 | 100.0% | 95.8% |
| 3gi8C00 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.51 | 40.0 | 2.87e-01 | 83.5% | 72.0% |
| 4hkaA01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 45.0 | 3.59e-01 | 100.0% | 83.0% |
| 3t5vA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 45.0 | 3.55e-01 | 100.0% | 90.3% |
| 3r9mA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.50 | 45.0 | 3.33e-01 | 100.0% | 63.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4009467 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.66 | 47.0 | 4.11e-01 | 73.4% | 70.3% |
| 3986576 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.66 | 47.0 | 3.78e-01 | 73.4% | 54.4% |
| 3841137 | 109.4.1.662 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MEKK4_N | 0.65 | 47.0 | 4.05e-01 | 74.8% | 73.2% |
| 3948660 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.64 | 45.0 | 4.07e-01 | 73.4% | 75.9% |
| 3320550 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 56.0 | 4.88e-01 | 96.4% | 78.0% |
| 3887439 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.63 | 45.0 | 3.89e-01 | 73.4% | 69.5% |
| 3990193 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 50.0 | 4.51e-01 | 99.3% | 62.6% |
| 3492775 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.60 | 46.0 | 3.24e-01 | 99.3% | 24.9% |
| 3596456 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 46.0 | 3.54e-01 | 100.0% | 35.2% |
| 4957124 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.59 | 51.0 | 3.95e-01 | 95.7% | 76.8% |
| 4022086 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.58 | 42.0 | 3.00e-01 | 96.4% | 24.9% |
| 5018506 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.58 | 47.0 | 4.74e-01 | 98.6% | 87.9% |
| 3378446 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.83e-01 | 100.0% | 44.0% |
| 4016246 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 46.0 | 4.15e-01 | 100.0% | 62.5% |
| 3693142 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.56 | 50.0 | 3.51e-01 | 97.1% | 47.5% |
| 4419194 | 601.4.1.38 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › RHG29_45_N | 0.55 | 37.0 | 4.20e-01 | 84.2% | 89.5% |
| 3943720 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 4.66e-01 | 92.8% | 90.0% |
| 3546062 | 376.1.2.39 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › RHG29_45_N | 0.55 | 37.0 | 4.08e-01 | 84.2% | 86.4% |
| 3593307 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 49.0 | 3.99e-01 | 99.3% | 85.4% |
| 3187296 | 603.1.1.98 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 | 0.54 | 37.0 | 3.27e-01 | 70.5% | 82.8% |
| 3257990 | 109.4.1.401 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NRDE-2 | 0.54 | 47.0 | 4.26e-01 | 96.4% | 96.8% |
| 4609827 | 109.4.1.646 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LCD1 | 0.54 | 48.0 | 3.40e-01 | 100.0% | 30.6% |
| 3970386 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.52 | 37.0 | 3.83e-01 | 84.2% | 74.8% |
| 3808555 | 109.4.1.2055 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_AP5Z1_C | 0.52 | 46.0 | 3.82e-01 | 100.0% | 54.7% |
| 3398015 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.52 | 43.0 | 3.21e-01 | 89.9% | 86.1% |
| 3988314 | 1002.1.1.4 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › ThrE_2 | 0.52 | 37.0 | 3.73e-01 | 74.8% | 81.2% |
| 3261432 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.51 | 41.0 | 3.57e-01 | 84.9% | 89.8% |
| 3870690 | 109.4.1.1647 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28330 | 0.51 | 39.0 | 4.06e-01 | 91.4% | 88.0% |
| 4009765 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 46.0 | 3.58e-01 | 99.3% | 91.8% |
| 3927597 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.50 | 37.0 | 3.94e-01 | 100.0% | 87.5% |
| 3354553 | 109.42.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › E3 ubiquitin-protein ligase SHPRH first helical domain › E3 ubiquitin-protein ligase SHPRH first helical domain › SHPRH_helical-1st | 0.50 | 36.0 | 3.35e-01 | 92.1% | 58.3% |