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JN880423.1__AFJ21500.1__X__00045
Bact-VirJN880423.1__AFJ21500.1__X__00045
Identity
- Accession:
- JN880423 ↗
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-206
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yi9A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 46.0 | 5.17e-01 | 100.0% | 78.1% |
| 4dzgA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 40.0 | 4.92e-01 | 99.4% | 87.6% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 46.0 | 5.23e-01 | 100.0% | 94.7% |
| 4dxzA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 37.0 | 4.58e-01 | 98.9% | 89.2% |
| 5fuiA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 44.0 | 5.16e-01 | 100.0% | 98.4% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 50.0 | 5.00e-01 | 100.0% | 80.3% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 38.0 | 4.56e-01 | 99.4% | 91.9% |
| 4p02B03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 45.0 | 4.98e-01 | 100.0% | 90.9% |
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.62 | 47.0 | 4.88e-01 | 100.0% | 85.8% |
| 1pk6C00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 43.0 | 4.94e-01 | 100.0% | 98.4% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 49.0 | 5.22e-01 | 100.0% | 96.8% |
| 4ht1T00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 42.0 | 4.86e-01 | 100.0% | 95.4% |
| 4oumA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 43.0 | 4.88e-01 | 100.0% | 97.7% |
| 4jdmA03 | 2.60.120.1340 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 46.0 | 4.91e-01 | 100.0% | 90.3% |
| 4mxwD00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 4.88e-01 | 99.4% | 100.0% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 45.0 | 4.83e-01 | 99.4% | 96.6% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.59 | 35.0 | 4.36e-01 | 96.1% | 98.1% |
| 3esmA00 | 2.60.40.2230 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein YcnI-like PF07987, DUF1775 | 0.58 | 37.0 | 4.06e-01 | 97.8% | 79.0% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 45.0 | 4.66e-01 | 99.4% | 86.1% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 43.0 | 4.55e-01 | 98.9% | 86.6% |
| 3kd4A01 | 2.60.40.3140 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 35.0 | 3.31e-01 | 100.0% | 49.0% |
| 1lnsA04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 51.0 | 5.02e-01 | 100.0% | 89.2% |
| 1tnrA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 44.0 | 4.85e-01 | 99.4% | 100.0% |
| 4lr4A01 | 2.60.120.1420 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 4.14e-01 | 100.0% | 73.3% |
| 3v0rA01 | 2.40.350.20 | Mainly Beta › Beta Barrel › AOC barrel-like › | 0.57 | 29.0 | 3.47e-01 | 78.7% | 70.0% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 30.0 | 3.71e-01 | 73.6% | 83.7% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 44.0 | 4.67e-01 | 96.1% | 92.9% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 43.0 | 4.59e-01 | 97.8% | 92.3% |
| 1a8mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 44.0 | 4.66e-01 | 99.4% | 96.7% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 31.0 | 3.97e-01 | 96.1% | 97.9% |
| 3ghmA03 | 2.60.120.830 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 39.0 | 4.27e-01 | 100.0% | 88.7% |
| 4b97A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.55 | 42.0 | 4.48e-01 | 99.4% | 92.7% |
| 8begA03 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 4.43e-01 | 97.2% | 91.9% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.55 | 44.0 | 4.60e-01 | 98.9% | 93.1% |
| 2f68X01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 4.23e-01 | 97.2% | 90.6% |
| 2re9A01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 4.72e-01 | 100.0% | 100.0% |
| 1g87A02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.54 | 42.0 | 4.46e-01 | 99.4% | 92.5% |
| 1x9pA01 | 2.60.120.550 | Mainly Beta › Sandwich › Jelly Rolls › Penton protein; domain 1 | 0.54 | 41.0 | 4.32e-01 | 100.0% | 86.5% |
| 2zahA02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 4.11e-01 | 100.0% | 93.0% |
| 5t89X05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 32.0 | 3.85e-01 | 93.8% | 92.7% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.53 | 49.0 | 4.24e-01 | 100.0% | 91.8% |
| 4npjB01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 35.0 | 3.89e-01 | 75.3% | 84.3% |
| 2jigA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 36.0 | 3.43e-01 | 100.0% | 58.7% |
| 1pmhX00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 48.0 | 4.78e-01 | 100.0% | 96.7% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 48.0 | 4.14e-01 | 100.0% | 72.1% |
| 7l0jB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 18.0 | 2.54e-01 | 97.8% | 59.6% |
| 2q3xA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 35.0 | 3.85e-01 | 98.9% | 83.8% |
| 5c8cB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 4.02e-01 | 100.0% | 65.0% |
| 7mjrA02 | 2.60.120.240 | Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain | 0.51 | 43.0 | 4.22e-01 | 89.3% | 86.1% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041351 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.74 | 44.0 | 5.28e-01 | 100.0% | 87.5% |
| 3469931 | 10.2.1.39 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monoox_C | 0.73 | 49.0 | 5.15e-01 | 100.0% | 75.0% |
| 3609787 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.73 | 44.0 | 5.00e-01 | 97.8% | 78.5% |
| 4103741 | 10.32.1.19 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC | 0.72 | 43.0 | 5.42e-01 | 99.4% | 99.0% |
| 3705435 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.70 | 41.0 | 5.19e-01 | 96.1% | 98.1% |
| 3957819 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.69 | 46.0 | 5.36e-01 | 100.0% | 95.2% |
| 5045352 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.68 | 40.0 | 5.01e-01 | 100.0% | 97.1% |
| 4853024 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.66 | 42.0 | 5.04e-01 | 95.5% | 95.8% |
| 3231620 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 40.0 | 4.68e-01 | 100.0% | 87.5% |
| 3598492 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 47.0 | 4.60e-01 | 100.0% | 68.3% |
| 3228767 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.65 | 40.0 | 4.69e-01 | 99.4% | 88.3% |
| 4980338 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.65 | 41.0 | 5.03e-01 | 100.0% | 98.3% |
| 3989496 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.65 | 24.0 | 3.97e-01 | 100.0% | 96.7% |
| 5042047 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.63 | 51.0 | 5.44e-01 | 100.0% | 97.4% |
| 3229302 | 10.33.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in minor capsid protein › Jelly-roll domain in minor capsid protein | 0.63 | 46.0 | 5.18e-01 | 100.0% | 97.1% |
| 4945587 | 10.1.2.188 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Zn_Ribbon_1 | 0.63 | 40.0 | 4.70e-01 | 100.0% | 93.3% |
| 4026938 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 43.0 | 4.95e-01 | 99.4% | 98.4% |
| 3886451 | 10.3.1.2 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q | 0.62 | 44.0 | 4.88e-01 | 100.0% | 92.8% |
| 1884973 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.61 | 46.0 | 4.91e-01 | 99.4% | 92.0% |
| 4863942 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.61 | 48.0 | 5.01e-01 | 100.0% | 88.6% |
| 3532030 | 10.32.1.222 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ATRN | 0.61 | 39.0 | 4.09e-01 | 100.0% | 69.1% |
| 3219058 | 10.4.1.39 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_M02D8_5_4th | 0.60 | 39.0 | 4.50e-01 | 100.0% | 90.4% |
| 3535343 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.60 | 45.0 | 4.87e-01 | 100.0% | 92.7% |
| 3785573 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 39.0 | 4.63e-01 | 100.0% | 97.5% |
| 3601923 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 45.0 | 4.47e-01 | 100.0% | 73.7% |
| 5006272 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 47.0 | 4.94e-01 | 100.0% | 90.3% |
| 3727537 | 10.32.1.245 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7590 | 0.59 | 40.0 | 4.52e-01 | 98.9% | 92.3% |
| 3908007 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.59 | 46.0 | 4.99e-01 | 100.0% | 98.7% |
| 3544174 | 11.1.5.95 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd | 0.59 | 39.0 | 4.27e-01 | 97.8% | 82.1% |
| 3170835 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 45.0 | 4.97e-01 | 98.3% | 99.3% |
| 3647162 | 10.32.1.212 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind | 0.58 | 46.0 | 3.92e-01 | 100.0% | 52.7% |
| 3588938 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.57 | 47.0 | 4.86e-01 | 100.0% | 90.6% |
| 5039229 | 10.1.2.184 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C | 0.57 | 53.0 | 5.27e-01 | 100.0% | 95.1% |
| 3897855 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.57 | 48.0 | 4.91e-01 | 100.0% | 92.0% |
| 4175825 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.57 | 21.0 | 3.23e-01 | 100.0% | 83.1% |
| 1111985 | 10.32.1.82 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM-like_2 | 0.57 | 41.0 | 3.96e-01 | 100.0% | 64.8% |
| 5038493 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 52.0 | 4.69e-01 | 100.0% | 98.8% |
| 3218582 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 39.0 | 4.17e-01 | 99.4% | 81.3% |
| 3241005 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.57 | 37.0 | 4.21e-01 | 92.7% | 86.7% |
| 5039250 | 10.1.2.184 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C | 0.57 | 51.0 | 5.21e-01 | 99.4% | 98.3% |
| 3508294 | 10.32.1.196 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD | 0.56 | 51.0 | 4.98e-01 | 97.8% | 100.0% |
| 5021612 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 35.0 | 4.05e-01 | 100.0% | 85.2% |
| 2579093 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.56 | 48.0 | 4.45e-01 | 100.0% | 71.4% |
| 5040077 | 10.1.2.184 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C | 0.55 | 51.0 | 5.10e-01 | 100.0% | 96.2% |
| 329362 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.55 | 45.0 | 4.66e-01 | 100.0% | 93.9% |
| 3616420 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 46.0 | 4.53e-01 | 99.4% | 83.7% |
| 2810268 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.54 | 50.0 | 4.83e-01 | 100.0% | 89.8% |
| 4307195 | 10.32.1.31 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C | 0.54 | 50.0 | 4.59e-01 | 100.0% | 96.0% |
| 3282039 | 10.2.1.96 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28588 | 0.53 | 45.0 | 4.59e-01 | 100.0% | 92.4% |
| 3619664 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 28.0 | 3.00e-01 | 73.6% | 58.4% |