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JN882285.1__AFC21465.1__GAP32_018__00018

Bact-Vir

JN882285.1__AFC21465.1__GAP32_018__00018

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-55
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.83 59.0 5.09e-01 100.0% 48.8%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.77 61.0 5.06e-01 100.0% 49.0%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 54.0 4.64e-01 100.0% 48.8%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.74 58.0 4.33e-01 100.0% 34.8%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.74 60.0 4.78e-01 100.0% 45.3%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 57.0 4.73e-01 100.0% 48.4%
2yweA05 3.30.70.2570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain 0.74 62.0 5.80e-01 96.3% 79.4%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.73 58.0 4.69e-01 100.0% 45.7%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.72 62.0 4.04e-01 100.0% 38.3%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.71 63.0 4.39e-01 100.0% 66.5%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.70 53.0 5.49e-01 100.0% 92.0%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 54.0 4.56e-01 100.0% 49.5%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 50.0 4.44e-01 100.0% 52.6%
1zq7A01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.69 59.0 4.56e-01 100.0% 48.0%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 62.0 4.80e-01 100.0% 47.8%
4p6bB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 49.0 2.92e-01 75.9% 10.4%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 56.0 4.74e-01 100.0% 55.2%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.69 53.0 4.19e-01 100.0% 39.8%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.69 51.0 4.03e-01 100.0% 37.6%
1zxqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 60.0 4.73e-01 100.0% 48.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.68 58.0 4.90e-01 100.0% 57.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.67 40.0 2.80e-01 79.6% 18.2%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 53.0 4.57e-01 100.0% 54.5%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.67 55.0 4.03e-01 100.0% 34.5%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 56.0 4.86e-01 100.0% 83.1%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 56.0 4.20e-01 100.0% 38.5%
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.65 56.0 3.93e-01 100.0% 86.8%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 58.0 4.75e-01 100.0% 67.0%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 56.0 4.68e-01 100.0% 100.0%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.21e-01 100.0% 47.5%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.42e-01 100.0% 53.8%
1ajwA00 2.70.50.30 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 0.63 54.0 4.03e-01 100.0% 38.6%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.29e-01 100.0% 48.1%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 42.0 3.44e-01 70.4% 36.4%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 43.0 2.62e-01 72.2% 10.6%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.63 55.0 4.87e-01 100.0% 97.5%
5f7uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 49.0 3.99e-01 100.0% 45.0%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.61 51.0 3.41e-01 98.1% 25.0%
3h11A00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 52.0 3.53e-01 98.1% 83.0%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.60 53.0 4.56e-01 100.0% 98.9%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 51.0 3.86e-01 100.0% 48.6%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.59 50.0 3.72e-01 98.1% 44.2%
2uvfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.04e-01 100.0% 60.3%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.89e-01 100.0% 42.6%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.58 50.0 4.04e-01 100.0% 76.9%
2nx8A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 50.0 3.58e-01 100.0% 69.0%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 3.74e-01 100.0% 56.7%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 49.0 3.60e-01 100.0% 74.4%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.12e-01 100.0% 32.6%
4ehiA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.56 47.0 3.48e-01 100.0% 58.3%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 49.0 3.97e-01 100.0% 54.4%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.55 45.0 3.34e-01 100.0% 36.5%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.50e-01 100.0% 44.4%
4p02B01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 42.0 3.36e-01 100.0% 37.6%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.55 42.0 2.95e-01 92.6% 77.7%
1kt0A02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 43.0 3.60e-01 100.0% 70.2%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.54 46.0 4.14e-01 100.0% 98.7%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.89e-01 100.0% 97.8%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 44.0 3.73e-01 100.0% 77.6%
1j20A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.51 39.0 2.79e-01 96.3% 76.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3858828 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.81 60.0 5.12e-01 100.0% 50.6%
3483331 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.80 59.0 5.33e-01 100.0% 57.3%
3235140 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.76 61.0 5.03e-01 100.0% 49.5%
3056605 11.1.1.170 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_66 0.76 55.0 4.59e-01 100.0% 44.2%
4179371 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.76 64.0 4.15e-01 100.0% 21.2%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.74 62.0 4.10e-01 100.0% 22.6%
4057352 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.73 62.0 3.98e-01 100.0% 20.4%
3756439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 56.0 4.12e-01 100.0% 33.6%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 47.0 3.78e-01 75.9% 36.1%
3385583 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.67 58.0 3.88e-01 100.0% 24.5%
3834262 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.66 49.0 3.64e-01 79.6% 67.9%
3715519 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 3.27e-01 79.6% 45.9%
4961537 2492.1.1.17 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.65 55.0 4.16e-01 100.0% 80.7%
3540693 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.65 59.0 4.60e-01 100.0% 61.8%
3963369 4222.1.1.2 a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.65 53.0 4.61e-01 100.0% 56.8%
3486455 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 58.0 4.26e-01 100.0% 56.4%
5050853 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.64 47.0 3.05e-01 81.5% 17.1%
4238754 223.3.1.7 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Glutaminase 0.64 46.0 3.37e-01 77.8% 28.4%
3973621 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.64 50.0 4.25e-01 96.3% 99.0%
5005349 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 3.01e-01 100.0% 10.3%
3993962 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.63 55.0 4.07e-01 100.0% 37.2%
3307087 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.63 41.0 4.41e-01 100.0% 90.0%
3974621 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.63 50.0 4.19e-01 98.1% 97.3%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.62 55.0 3.90e-01 100.0% 41.2%
3244813 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.62 55.0 4.12e-01 100.0% 45.9%
4003814 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 48.0 3.72e-01 100.0% 36.4%
3213885 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.61 53.0 4.33e-01 100.0% 59.0%
3627211 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.60 53.0 3.56e-01 100.0% 28.6%
4990094 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.60 51.0 4.73e-01 98.1% 97.1%
4091593 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 52.0 3.88e-01 100.0% 97.9%
3256588 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 2.93e-01 100.0% 24.7%
1174160 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 51.0 4.04e-01 100.0% 60.3%
4249217 253.1.1.1 a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C 0.58 45.0 3.03e-01 85.2% 53.2%
3218243 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 52.0 4.40e-01 100.0% 83.5%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.57 47.0 4.80e-01 100.0% 98.1%
None 0.57 47.0 3.37e-01 100.0% 67.8%
3599779 253.1.1.1 a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C 0.56 41.0 2.68e-01 77.8% 50.6%
4234325 10.32.1.18 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.55 45.0 3.37e-01 100.0% 43.0%
4129719 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.54 47.0 3.32e-01 100.0% 37.8%
3908517 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 49.0 3.80e-01 100.0% 47.8%
3727505 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 44.0 3.66e-01 100.0% 78.0%
3555970 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.51 43.0 3.08e-01 100.0% 40.6%