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JN882285.1__AFC21561.1__GAP32_113__00114
Bact-VirJN882285.1__AFC21561.1__GAP32_113__00114
Identity
- Accession:
- JN882285 ↗
- Kingdom:
- phage
Quality
68.3
mean pLDDT
Taxonomy
TaxID: 1141136
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-166
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 25.0 | 3.63e-01 | 84.4% | 86.4% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 17.0 | 3.14e-01 | 75.6% | 94.9% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 32.0 | 3.65e-01 | 80.0% | 70.8% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 28.0 | 3.68e-01 | 71.9% | 87.6% |
| 2zutA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 21.0 | 3.16e-01 | 96.2% | 86.4% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.53 | 26.0 | 3.49e-01 | 86.9% | 90.1% |
| 2oqbA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 25.0 | 3.06e-01 | 91.3% | 67.6% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.52 | 35.0 | 3.66e-01 | 80.0% | 75.2% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 32.0 | 3.37e-01 | 76.9% | 66.4% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 18.0 | 2.98e-01 | 75.0% | 98.0% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 28.0 | 3.39e-01 | 82.5% | 80.2% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.51 | 39.0 | 4.09e-01 | 86.9% | 87.3% |
| 8f66A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 38.0 | 3.48e-01 | 78.1% | 76.7% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 37.0 | 3.62e-01 | 77.5% | 80.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 18.0 | 4.13e-01 | 73.1% | 97.1% |
| 4979564 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.69 | 23.0 | 3.52e-01 | 86.9% | 68.6% |
| 5041236 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.56 | 23.0 | 3.46e-01 | 82.5% | 100.0% |
| 4960447 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 32.0 | 3.95e-01 | 95.6% | 96.8% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.54 | 23.0 | 3.24e-01 | 82.5% | 82.7% |
| 3754362 | 3426.1.1.0 ↗ | beta meanders › Telethonin › Telethonin › Telethonin | 0.54 | 21.0 | 3.39e-01 | 87.5% | 96.7% |
| 5041229 | 375.13.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain | 0.53 | 24.0 | 3.34e-01 | 85.6% | 100.0% |
| 4241417 | 219.1.1.21 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 | 0.52 | 38.0 | 3.40e-01 | 100.0% | 52.3% |
| 1512999 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.51 | 26.0 | 3.13e-01 | 86.3% | 71.3% |
| 5028087 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 29.0 | 3.32e-01 | 95.6% | 74.8% |
| 3249011 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 35.0 | 3.72e-01 | 86.3% | 80.7% |
| 5006530 | 331.3.1.18 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DAPG_hydrolase | 0.50 | 37.0 | 3.19e-01 | 95.6% | 47.8% |
| 4408024 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.50 | 19.0 | 3.10e-01 | 79.4% | 93.3% |