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JN882285.1__AFC21603.1__GAP32_153__00156

Bact-Vir

JN882285.1__AFC21603.1__GAP32_153__00156

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-88
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 60.0 4.49e-01 98.0% 43.7%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 59.0 4.29e-01 98.0% 40.6%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 61.0 4.55e-01 100.0% 46.0%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 59.0 4.17e-01 98.0% 85.3%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 59.0 3.97e-01 100.0% 92.2%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 60.0 4.44e-01 100.0% 43.8%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.43e-01 95.9% 56.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 56.0 4.31e-01 100.0% 80.2%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 58.0 3.85e-01 100.0% 32.5%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 59.0 3.99e-01 100.0% 31.1%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 56.0 4.18e-01 100.0% 83.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 56.0 4.92e-01 100.0% 73.7%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 54.0 4.78e-01 95.9% 63.5%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.65 55.0 4.38e-01 100.0% 54.1%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 53.0 4.40e-01 98.0% 66.3%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 52.0 4.36e-01 98.0% 65.6%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 3.94e-01 100.0% 38.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 54.0 4.77e-01 100.0% 73.7%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 4.10e-01 100.0% 50.0%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 52.0 4.23e-01 98.0% 69.5%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 51.0 4.27e-01 100.0% 65.0%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.63 54.0 4.99e-01 100.0% 84.6%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 54.0 3.69e-01 100.0% 82.5%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.62 51.0 3.69e-01 100.0% 35.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.62 54.0 4.14e-01 100.0% 80.3%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 50.0 4.15e-01 100.0% 70.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.61e-01 100.0% 76.6%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.62 47.0 3.46e-01 100.0% 29.4%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 51.0 4.01e-01 98.0% 92.8%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.45e-01 100.0% 74.2%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.61e-01 100.0% 45.7%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.74e-01 100.0% 73.4%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 3.13e-01 100.0% 26.2%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.81e-01 100.0% 57.4%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.72e-01 100.0% 41.3%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.33e-01 100.0% 28.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.79e-01 100.0% 82.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 44.0 3.65e-01 100.0% 64.0%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.56 48.0 4.47e-01 100.0% 89.2%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 46.0 3.27e-01 100.0% 31.3%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 45.0 4.02e-01 100.0% 67.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 45.0 3.60e-01 100.0% 57.1%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.56 48.0 3.53e-01 100.0% 67.4%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.00e-01 81.6% 49.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.51e-01 100.0% 90.0%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.28e-01 100.0% 38.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.44e-01 98.0% 92.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 42.0 3.59e-01 95.9% 55.3%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 45.0 2.97e-01 100.0% 29.6%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 38.0 2.41e-01 79.6% 63.8%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 3.16e-01 100.0% 38.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 42.0 3.59e-01 98.0% 56.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.49e-01 100.0% 65.7%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.52 43.0 3.41e-01 100.0% 49.1%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.51e-01 100.0% 58.8%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 42.0 3.31e-01 100.0% 48.4%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.50e-01 100.0% 61.1%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.22e-01 98.0% 69.1%
1d0nA06 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 42.0 3.15e-01 95.9% 73.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602499 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.77 68.0 4.98e-01 100.0% 98.5%
3929257 220.4.1.0 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.74 62.0 5.31e-01 95.9% 98.8%
4930482 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.72 62.0 4.66e-01 100.0% 92.0%
4861314 4356.1.1.1 beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 › bCoV_NSP1 0.72 56.0 4.11e-01 100.0% 32.8%
3635615 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 60.0 4.08e-01 100.0% 77.8%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 60.0 5.80e-01 100.0% 98.2%
5069875 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.67 55.0 3.60e-01 100.0% 20.4%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 57.0 4.50e-01 100.0% 51.9%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.30e-01 100.0% 87.3%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 57.0 5.47e-01 100.0% 96.6%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 57.0 5.43e-01 100.0% 94.9%
5013669 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 55.0 4.71e-01 100.0% 64.7%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 56.0 4.47e-01 100.0% 53.3%
3619496 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 57.0 3.37e-01 100.0% 17.6%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 55.0 4.91e-01 100.0% 74.7%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 56.0 4.83e-01 100.0% 66.3%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 55.0 4.87e-01 100.0% 73.3%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 55.0 5.12e-01 100.0% 88.9%
3288866 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 53.0 4.15e-01 98.0% 60.0%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 54.0 4.94e-01 100.0% 80.0%
3972645 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.64 53.0 4.02e-01 100.0% 47.4%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 55.0 4.37e-01 100.0% 53.8%
3822726 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.64 54.0 3.33e-01 98.0% 98.0%
4007999 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 55.0 4.10e-01 100.0% 40.0%
5026284 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 52.0 4.39e-01 100.0% 68.4%
3189069 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 52.0 4.13e-01 100.0% 81.7%
3271265 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 54.0 4.18e-01 100.0% 83.3%
4021140 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 52.0 4.10e-01 100.0% 78.3%
4001211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 52.0 4.62e-01 100.0% 73.1%
3847345 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 4.13e-01 98.0% 78.1%
3510664 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 51.0 3.80e-01 98.0% 59.3%
3514467 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 50.0 3.82e-01 98.0% 66.2%
3281849 303.1.1.3 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.61 51.0 4.01e-01 100.0% 46.0%
2532980 219.1.1.53 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.60 50.0 3.26e-01 100.0% 29.9%
5034902 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 51.0 3.69e-01 100.0% 33.8%
4944975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 3.77e-01 100.0% 39.2%
177877 219.1.1.43 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.58 50.0 3.33e-01 100.0% 49.3%
3436460 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 49.0 3.56e-01 100.0% 67.6%
4956150 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 49.0 4.72e-01 98.0% 87.3%
5055397 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 3.84e-01 100.0% 60.0%
5001346 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.61e-01 100.0% 38.4%
3700507 2004.1.1.427 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.56 47.0 2.88e-01 98.0% 16.4%
4484519 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.87e-01 100.0% 51.6%
3791560 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 46.0 3.16e-01 98.0% 35.9%
3582591 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.56 48.0 3.69e-01 100.0% 45.2%
3306922 11.1.1.60 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.55 39.0 2.76e-01 75.5% 57.1%
4028543 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.55 47.0 4.17e-01 100.0% 70.7%
4945478 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 47.0 3.45e-01 100.0% 36.4%
5070517 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.94e-01 93.9% 61.3%
3497068 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.67e-01 100.0% 53.3%
3926687 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 45.0 3.50e-01 95.9% 54.2%
3672714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.23e-01 98.0% 76.7%
3442710 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.54 43.0 3.26e-01 98.0% 100.0%
3217546 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.54 48.0 3.65e-01 100.0% 59.1%
5038559 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.06e-01 100.0% 71.4%
3613893 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 43.0 3.59e-01 100.0% 86.0%
5044312 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.56e-01 100.0% 58.0%
5071112 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 41.0 3.17e-01 100.0% 42.2%
5060115 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 41.0 3.53e-01 100.0% 65.6%
5003848 221.11.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in probable beta-lactamase › beta-grasp fold domain in probable beta-lactamase 0.50 44.0 3.75e-01 100.0% 75.0%