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JN882285.1__AFC21618.1__GAP32_168__00171

Bact-Vir

JN882285.1__AFC21618.1__GAP32_168__00171

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Cronobacter_phage_vB_CsaM_GAP32

TaxID: 1141136

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-94
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.68 51.0 4.03e-01 80.0% 67.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 47.0 3.82e-01 85.7% 39.4%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.64 45.0 3.89e-01 72.9% 81.4%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 51.0 3.36e-01 95.7% 27.0%
3hjgA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.60 41.0 3.02e-01 71.4% 99.5%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.19e-01 95.7% 22.3%
3ed3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.74e-01 85.7% 75.2%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.63e-01 74.3% 98.0%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.66e-01 72.9% 96.6%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.56 50.0 3.35e-01 100.0% 37.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.55 32.0 3.50e-01 70.0% 70.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.32e-01 100.0% 41.7%
2kcdA00 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.54 41.0 3.50e-01 100.0% 49.2%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.43e-01 71.4% 100.0%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 41.0 3.44e-01 88.6% 48.2%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 3.11e-01 82.9% 59.6%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 33.0 2.94e-01 91.4% 38.8%
6grrA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.84e-01 100.0% 63.2%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.93e-01 100.0% 75.0%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 46.0 3.60e-01 100.0% 68.8%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 42.0 3.66e-01 98.6% 88.0%
7jtjA01 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.50 39.0 2.65e-01 82.9% 72.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 3.97e-01 85.7% 42.2%
3599949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 48.0 4.36e-01 97.1% 60.0%
3433324 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.63 55.0 3.47e-01 97.1% 25.3%
3368394 4325.1.1.11 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.63 49.0 4.47e-01 97.1% 62.1%
3704401 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 54.0 4.66e-01 98.6% 87.8%
2491375 5.1.4.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MgpC 0.63 55.0 3.47e-01 100.0% 67.2%
3998757 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 56.0 3.43e-01 100.0% 38.6%
3593907 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 56.0 3.69e-01 100.0% 26.2%
3706025 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.39e-01 95.7% 21.7%
3529118 5.1.4.111 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS6 0.60 53.0 3.34e-01 100.0% 30.1%
3298472 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 52.0 3.87e-01 95.7% 51.2%
5079140 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 3.91e-01 80.0% 93.2%
3242246 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.59 52.0 3.27e-01 97.1% 26.1%
3833283 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.59 46.0 3.14e-01 97.1% 23.1%
5054442 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.83e-01 71.4% 100.0%
None — 0.59 50.0 3.36e-01 97.1% 24.9%
4029773 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.10e-01 95.7% 24.7%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 41.0 4.31e-01 97.1% 86.7%
4954883 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.58 37.0 2.53e-01 98.6% 17.4%
3708180 7039.1.1.0 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.58 50.0 3.54e-01 100.0% 96.7%
4126991 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 43.0 3.94e-01 100.0% 61.1%
3328359 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 48.0 3.42e-01 100.0% 32.3%
3920554 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.57 49.0 2.91e-01 97.1% 20.0%
3280772 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.57 43.0 3.70e-01 82.9% 80.9%
4987604 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.63e-01 74.3% 89.5%
3492507 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.56 47.0 2.81e-01 95.7% 22.1%
3596724 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.96e-01 97.1% 22.6%
3580948 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.55 49.0 3.73e-01 100.0% 62.4%
4552597 2.1.1.11 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.54 37.0 3.50e-01 70.0% 81.0%
3594508 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 48.0 3.25e-01 100.0% 53.2%
2859712 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.54 42.0 3.10e-01 88.6% 77.4%
2740084 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 36.0 3.16e-01 91.4% 44.5%
4081800 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.54 45.0 3.33e-01 100.0% 40.8%
3813290 2484.1.1.198 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 0.53 45.0 2.89e-01 100.0% 92.7%
3413760 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 48.0 3.70e-01 100.0% 70.0%
3487630 2484.1.1.170 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ZSWIM1-3_RNaseH-like 0.53 47.0 3.22e-01 100.0% 81.6%
3674239 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 42.0 3.78e-01 91.4% 72.4%
3694825 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 44.0 2.76e-01 97.1% 24.7%
4927420 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.52 36.0 3.44e-01 74.3% 62.4%
3269184 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.68e-01 98.6% 63.2%
3661619 192.18.1.0 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.51 40.0 2.86e-01 95.7% 27.1%
3224773 5.1.4.589 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7911 0.51 43.0 2.90e-01 98.6% 32.3%
3845121 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.50 46.0 3.19e-01 100.0% 46.4%