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JN882285.1__AFC21749.1__GAP32_299__00302

Bact-Vir

JN882285.1__AFC21749.1__GAP32_299__00302

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05265.21 best DUF723 57.2 2.40e-15 90.5% 92.1%
D2 high residues 74-127
PDB
CATH (81)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.70 61.0 4.91e-01 100.0% 74.8%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 57.0 4.71e-01 100.0% 74.0%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 56.0 4.45e-01 100.0% 65.3%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 56.0 4.45e-01 100.0% 89.3%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 55.0 4.68e-01 100.0% 77.6%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 49.0 3.05e-01 81.5% 26.5%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 48.0 3.13e-01 81.5% 56.9%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.65 54.0 4.55e-01 100.0% 76.2%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 53.0 4.73e-01 98.1% 89.3%
4y85C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 44.0 3.47e-01 74.1% 78.2%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 53.0 4.36e-01 100.0% 67.3%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 4.37e-01 83.3% 79.5%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 44.0 3.12e-01 74.1% 42.9%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 44.0 4.13e-01 72.2% 89.2%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 53.0 4.50e-01 100.0% 79.6%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 47.0 3.06e-01 81.5% 47.1%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 45.0 4.06e-01 77.8% 91.1%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 51.0 3.61e-01 94.4% 27.9%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 50.0 3.05e-01 92.6% 39.1%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.62 50.0 4.18e-01 92.6% 67.7%
4ii2A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 47.0 3.19e-01 85.2% 81.4%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.55e-01 81.5% 98.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.71e-01 96.3% 88.9%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 44.0 4.72e-01 81.5% 91.3%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.05e-01 98.1% 39.8%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 50.0 4.26e-01 100.0% 81.8%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 51.0 4.29e-01 100.0% 90.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.06e-01 83.3% 68.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.83e-01 83.3% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 46.0 4.70e-01 85.2% 92.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.50e-01 98.1% 80.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 45.0 4.52e-01 83.3% 83.3%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 44.0 2.63e-01 81.5% 38.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 47.0 4.84e-01 88.9% 96.1%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.30e-01 83.3% 91.8%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 4.09e-01 92.6% 95.5%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 42.0 2.88e-01 81.5% 55.9%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.58 41.0 3.76e-01 85.2% 55.3%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 44.0 3.58e-01 88.9% 66.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.30e-01 85.2% 87.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.34e-01 85.2% 91.5%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 44.0 4.44e-01 88.9% 90.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.18e-01 90.7% 69.9%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.59e-01 100.0% 64.5%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 46.0 4.03e-01 100.0% 83.0%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 3.58e-01 100.0% 54.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.57 42.0 4.16e-01 83.3% 75.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.28e-01 85.2% 94.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.57 42.0 4.24e-01 83.3% 96.4%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.87e-01 96.3% 20.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.39e-01 94.4% 86.4%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.81e-01 98.1% 40.1%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.66e-01 98.1% 88.6%
2zbwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.65e-01 98.1% 90.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.42e-01 90.7% 93.3%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 3.52e-01 92.6% 89.3%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 3.33e-01 75.9% 62.9%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 38.0 3.77e-01 98.1% 68.4%
2qa1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 2.61e-01 81.5% 48.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.48e-01 90.7% 96.2%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.63e-01 74.1% 90.6%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.32e-01 94.4% 91.9%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 3.56e-01 98.1% 90.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 40.0 2.82e-01 83.3% 27.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.38e-01 100.0% 95.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.28e-01 92.6% 87.5%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.84e-01 94.4% 77.2%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 44.0 3.43e-01 94.4% 75.2%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 42.0 2.77e-01 98.1% 28.0%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.74e-01 98.1% 62.5%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.52 45.0 2.77e-01 100.0% 85.5%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 39.0 3.39e-01 96.3% 89.8%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.01e-01 100.0% 37.7%
1zy9A03 2.60.40.2760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.77e-01 87.0% 95.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 3.82e-01 98.1% 80.0%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.63e-01 98.1% 34.7%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.41e-01 94.4% 59.3%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.70e-01 98.1% 81.2%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 39.0 3.36e-01 98.1% 89.8%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.50 40.0 3.87e-01 96.3% 87.9%
3bdlA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 38.0 2.81e-01 85.2% 65.6%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3262212 7502.1.1.7 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.71 60.0 4.85e-01 100.0% 69.1%
4455003 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 58.0 5.03e-01 100.0% 85.6%
5036878 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 58.0 4.71e-01 100.0% 70.6%
4439755 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 58.0 4.84e-01 100.0% 77.0%
4415964 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 58.0 4.85e-01 100.0% 79.8%
3180655 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 57.0 4.27e-01 100.0% 69.3%
4238930 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 56.0 4.69e-01 100.0% 82.0%
3393343 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.67 49.0 3.06e-01 81.5% 42.9%
4286529 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 55.0 4.82e-01 100.0% 85.6%
4994848 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 55.0 4.58e-01 100.0% 73.3%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.66 53.0 4.15e-01 88.9% 53.9%
3940920 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 53.0 3.23e-01 92.6% 23.2%
4128583 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 55.0 4.62e-01 100.0% 77.0%
4163844 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 54.0 4.67e-01 100.0% 81.1%
4279058 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 54.0 4.75e-01 100.0% 84.4%
4326019 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 55.0 4.62e-01 100.0% 76.0%
4315674 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.65 54.0 4.64e-01 100.0% 80.0%
4046713 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 55.0 4.74e-01 100.0% 84.4%
3415181 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.65 47.0 3.01e-01 81.5% 45.2%
5077042 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.65 52.0 4.40e-01 92.6% 94.7%
4562754 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 53.0 4.53e-01 100.0% 84.0%
4595963 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.64 53.0 4.57e-01 100.0% 80.0%
4381486 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.64 53.0 4.68e-01 100.0% 84.1%
5055310 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 54.0 4.67e-01 100.0% 83.3%
5036946 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 54.0 4.58e-01 100.0% 86.3%
4940298 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 53.0 4.62e-01 100.0% 84.4%
4245071 2003.1.2.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 47.0 2.98e-01 81.5% 29.7%
4310167 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 52.0 4.58e-01 100.0% 84.4%
4296276 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 52.0 4.59e-01 100.0% 84.4%
3902975 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 50.0 4.88e-01 87.0% 98.3%
4955327 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 52.0 5.19e-01 100.0% 94.5%
4639808 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.63 53.0 4.62e-01 100.0% 84.4%
4873705 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.63 50.0 3.85e-01 90.7% 98.5%
4470414 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 52.0 4.30e-01 100.0% 77.3%
1349791 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.63 50.0 3.59e-01 92.6% 90.5%
4943707 2003.1.3.78 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO_C 0.63 46.0 3.05e-01 81.5% 55.8%
4031833 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 50.0 4.95e-01 94.4% 95.0%
4991490 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 49.0 4.76e-01 96.3% 89.2%
4587696 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 46.0 3.83e-01 81.5% 63.0%
4982887 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 51.0 4.43e-01 100.0% 80.0%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 52.0 4.32e-01 96.3% 75.0%
4125289 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 51.0 4.41e-01 100.0% 80.9%
5014688 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 49.0 4.89e-01 90.7% 94.5%
3578731 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 51.0 3.40e-01 96.3% 40.4%
4394756 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 50.0 4.30e-01 100.0% 75.0%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.87e-01 94.4% 87.3%
4168836 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.61 42.0 3.88e-01 72.2% 84.3%
5014686 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 46.0 4.66e-01 90.7% 90.9%
4991489 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 48.0 4.55e-01 96.3% 85.7%
3697881 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.61 44.0 2.64e-01 81.5% 37.8%
1503826 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.60 50.0 3.61e-01 98.1% 92.1%
3259877 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.60 51.0 3.50e-01 96.3% 46.3%
4937436 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.60 52.0 3.29e-01 100.0% 24.6%
5061853 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 46.0 3.73e-01 92.6% 85.8%
4020216 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.59 46.0 2.91e-01 90.7% 14.8%
3973131 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.59 49.0 2.95e-01 98.1% 40.0%
4497830 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.59 48.0 3.40e-01 98.1% 86.2%
1688900 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.59 46.0 3.35e-01 92.6% 94.8%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 46.0 4.26e-01 92.6% 76.0%
4287237 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.58 48.0 3.81e-01 98.1% 92.0%
4636455 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.58 41.0 4.40e-01 77.8% 97.8%
3281458 2003.1.3.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.58 47.0 2.88e-01 98.1% 39.5%
3855773 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.58 49.0 3.49e-01 100.0% 37.8%
4958447 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 45.0 3.35e-01 92.6% 66.7%
None 0.57 43.0 2.57e-01 85.2% 47.4%
4935198 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 46.0 3.47e-01 98.1% 90.0%
3319421 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 43.0 4.41e-01 83.3% 96.0%
5035761 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 44.0 3.07e-01 92.6% 49.3%
3317787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.39e-01 83.3% 96.0%
3969301 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 44.0 3.57e-01 98.1% 90.8%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.56 45.0 4.16e-01 94.4% 77.3%
3303020 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.21e-01 81.5% 94.0%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.55 47.0 4.31e-01 98.1% 79.5%
4030472 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.55 42.0 2.98e-01 88.9% 24.7%
4948975 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 41.0 3.50e-01 85.2% 86.0%
5044393 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.87e-01 79.6% 90.0%
3580264 366.1.1.8 few secondary structure elements › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › ADAMTS_CR_3 0.55 42.0 3.59e-01 90.7% 51.0%
3837990 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.54 43.0 3.42e-01 94.4% 43.8%
1260456 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.54 41.0 3.74e-01 90.7% 58.5%
3436093 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 39.0 3.66e-01 81.5% 78.7%
4968405 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 41.0 3.26e-01 81.5% 73.6%
3249185 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.54 45.0 3.49e-01 100.0% 51.1%
5033222 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 40.0 3.20e-01 79.6% 77.1%
3515415 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.36e-01 96.3% 8.7%
5040072 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 43.0 3.10e-01 98.1% 60.0%
3930651 3246.1.1.4 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.52 41.0 3.57e-01 94.4% 53.7%
4496885 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 39.0 2.73e-01 85.2% 66.3%
3604394 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.50 44.0 3.65e-01 100.0% 97.0%
D3 high residues 144-244
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13455.13 best MUG113 25.3 2.50e-05 75.2% 86.3%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h5fB00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 31.0 3.59e-01 92.1% 64.9%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.58 44.0 3.34e-01 80.2% 71.4%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.56 37.0 3.32e-01 100.0% 47.6%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.54 33.0 3.54e-01 94.1% 72.6%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 29.0 3.55e-01 100.0% 85.5%
3aqgB00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 35.0 3.28e-01 98.0% 50.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.81 75.0 7.41e-01 100.0% 97.1%
3735748 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.74 68.0 5.70e-01 100.0% 60.6%
3989300 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.73 67.0 6.52e-01 100.0% 94.5%
3738592 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.72 66.0 5.56e-01 100.0% 67.3%
4651815 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.70 65.0 5.27e-01 100.0% 65.6%
4929079 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.68 48.0 4.97e-01 80.2% 78.7%
4990791 821.1.1.4 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.64 56.0 5.32e-01 97.0% 99.2%
3399490 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.64 39.0 4.74e-01 82.2% 95.4%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 36.0 3.95e-01 95.0% 70.9%
5035856 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.53 36.0 4.01e-01 70.3% 93.3%
3392605 2492.1.1.49 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26560 0.52 37.0 3.48e-01 75.2% 84.6%
4026065 221.1.1.177 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNAPC3 0.51 40.0 3.50e-01 83.2% 99.3%
4057352 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.50 43.0 3.31e-01 99.0% 96.5%
3944588 241.1.1.9 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF3156 0.50 41.0 3.51e-01 91.1% 98.8%
4321638 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.50 35.0 4.00e-01 73.3% 100.0%