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JN882285.1__AFC21848.1__GAP32_396__00401

Bact-Vir

JN882285.1__AFC21848.1__GAP32_396__00401

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Cronobacter_phage_vB_CsaM_GAP32

TaxID: 1141136

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-107
PDB
Domain cluster: rep: MW749003.1__QXN70097.1__INTERNEXUS_56__00056__D19-89
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xr1A03 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.74 38.0 2.56e-01 100.0% 14.7%
2x3lB03 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.68 29.0 3.35e-01 88.3% 52.5%
6z0wA01 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.59 36.0 3.19e-01 96.1% 41.2%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.79e-01 72.7% 61.4%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 43.0 3.72e-01 81.8% 100.0%
2fsqA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.55 48.0 3.46e-01 98.7% 69.8%
2z0bE00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.17e-01 97.4% 89.6%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 44.0 3.56e-01 97.4% 93.4%
2kzfA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 43.0 3.92e-01 90.9% 77.4%
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 45.0 3.37e-01 94.8% 84.5%
3dxvA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.64e-01 96.1% 54.6%
5ljvA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 3.52e-01 100.0% 60.6%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 39.0 3.23e-01 89.6% 44.7%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.51 36.0 3.37e-01 84.4% 58.2%
4oyvA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 41.0 3.48e-01 92.2% 87.0%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 43.0 2.92e-01 100.0% 93.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077459 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 44.0 3.55e-01 100.0% 34.5%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.68 44.0 3.60e-01 100.0% 37.0%
3281830 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 58.0 4.77e-01 98.7% 97.8%
4197449 109.2.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like 0.61 36.0 2.30e-01 100.0% 11.2%
4964086 2004.1.1.1218 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PilB3_C 0.58 36.0 2.22e-01 93.5% 9.7%
3516174 5050.1.1.31 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr 0.57 50.0 3.59e-01 100.0% 82.6%
4085416 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 49.0 3.58e-01 100.0% 79.1%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.55 41.0 2.99e-01 80.5% 48.0%
3895924 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 39.0 3.25e-01 76.6% 68.3%
3891521 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 48.0 3.25e-01 98.7% 30.4%
1117773 1.1.13.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_A-dom_C,DTP-pb9_A-dom_N 0.53 40.0 4.29e-01 93.5% 91.0%
3443400 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.53 29.0 3.01e-01 75.3% 53.3%
4939371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 4.04e-01 94.8% 100.0%
None — 0.53 46.0 2.53e-01 97.4% 10.6%
3381618 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.60e-01 87.0% 66.4%
3229557 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.52 46.0 2.95e-01 100.0% 20.5%
3912173 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 34.0 3.46e-01 70.1% 76.2%
3246432 2008.1.1.24 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDCD9 0.51 44.0 2.77e-01 100.0% 39.5%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 42.0 3.15e-01 89.6% 45.3%
4147969 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 42.0 4.12e-01 90.9% 88.2%
3738064 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.50 39.0 3.65e-01 85.7% 97.0%
3682673 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 44.0 2.60e-01 100.0% 25.7%