←Back to structures

JN882285.1__AFC21925.1__GAP32_467__00478

Bact-Vir

JN882285.1__AFC21925.1__GAP32_467__00478

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Cronobacter_phage_vB_CsaM_GAP32

TaxID: 1141136

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-107
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cgnA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.73 50.0 3.60e-01 100.0% 26.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 51.0 4.76e-01 100.0% 63.3%
4nphA02 1.20.1270.330 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 55.0 4.71e-01 100.0% 55.4%
1yzbA02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.61 45.0 4.52e-01 91.3% 82.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940386 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.70 58.0 3.47e-01 100.0% 13.3%
3516253 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.68 57.0 3.53e-01 100.0% 15.7%
3580316 4082.1.1.0 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.65 47.0 4.83e-01 95.7% 80.0%
D2 medium residues 28-59_118-163
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tt2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 46.0 3.02e-01 76.9% 95.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 45.0 3.13e-01 80.8% 92.8%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 43.0 3.42e-01 79.5% 99.3%
4fd5A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.29e-01 85.9% 99.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 45.0 4.05e-01 85.9% 72.5%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 42.0 3.33e-01 82.1% 99.4%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.47e-01 85.9% 100.0%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.40e-01 82.1% 98.0%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.51e-01 82.1% 92.4%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.40e-01 80.8% 98.6%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.76e-01 91.0% 61.5%
3qb8A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.21e-01 85.9% 100.0%
3s6fA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.40e-01 82.1% 82.4%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 43.0 3.04e-01 88.5% 75.4%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 43.0 3.24e-01 98.7% 88.3%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.51 43.0 3.44e-01 94.9% 90.1%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 45.0 4.45e-01 98.7% 96.4%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.28e-01 85.9% 96.6%
5h8iI00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 40.0 2.84e-01 91.0% 82.3%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.15e-01 85.9% 99.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.50 34.0 3.43e-01 87.2% 69.2%
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 42.0 3.58e-01 96.2% 89.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 30.0 3.64e-01 89.7% 64.0%
3615429 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.64 34.0 4.21e-01 83.3% 82.0%
3559319 101.1.11.134 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Sarcoglycan_1 0.63 30.0 3.47e-01 70.5% 61.7%
3283090 11.1.1.1232 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26059 0.63 37.0 3.71e-01 98.7% 56.2%
3283745 319.1.1.16 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 0.57 33.0 3.39e-01 98.7% 57.3%
3964452 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 40.0 2.84e-01 74.4% 40.4%
4347651 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 50.0 3.78e-01 100.0% 69.2%
4951451 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 44.0 3.60e-01 85.9% 87.6%
3638210 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 44.0 3.23e-01 85.9% 67.8%
5022797 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.54 45.0 3.45e-01 100.0% 80.0%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.53 35.0 3.57e-01 98.7% 69.3%
3818015 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 42.0 3.09e-01 91.0% 34.2%
3478678 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.65e-01 98.7% 70.7%
3199835 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 33.0 3.44e-01 100.0% 66.7%
4975364 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.53 34.0 3.72e-01 97.4% 80.0%
3748744 12.3.1.52 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF30771 0.52 42.0 3.07e-01 88.5% 90.2%
3511507 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.51 46.0 4.00e-01 98.7% 80.5%
3952629 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 43.0 2.91e-01 96.2% 25.3%
4957034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 42.0 2.85e-01 100.0% 94.0%