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JN882285.1__AFC21968.1__GAP32_508__00521

Bact-Vir

JN882285.1__AFC21968.1__GAP32_508__00521

Identity

Accession:
JN882285 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Cronobacter_phage_vB_CsaM_GAP32

TaxID: 1141136

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-163
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 33.3 6.20e-08 32.6% 74.5%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.68 21.0 2.76e-01 70.8% 46.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 19.0 2.95e-01 70.8% 59.3%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 24.0 2.62e-01 88.2% 39.8%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.62 28.0 3.74e-01 93.8% 77.1%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 23.0 3.16e-01 100.0% 68.6%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 19.0 3.14e-01 85.4% 78.4%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 23.0 3.09e-01 75.7% 67.1%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 21.0 3.00e-01 94.4% 67.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 19.0 3.01e-01 86.1% 76.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 20.0 2.92e-01 77.1% 69.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 21.0 2.98e-01 99.3% 69.7%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 17.0 2.93e-01 75.0% 76.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 21.0 2.92e-01 94.4% 67.2%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 21.0 2.95e-01 95.1% 69.7%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 21.0 3.00e-01 94.4% 71.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 19.0 2.66e-01 72.2% 62.7%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 17.0 3.11e-01 95.8% 93.2%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 21.0 2.91e-01 98.6% 71.6%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 15.0 2.67e-01 93.8% 79.5%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 23.0 2.64e-01 77.1% 51.4%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 22.0 2.88e-01 95.1% 68.9%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 20.0 2.81e-01 85.4% 71.9%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 20.0 2.68e-01 72.9% 64.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.65 19.0 2.97e-01 70.8% 59.3%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.65 20.0 2.69e-01 70.8% 46.7%
3931602 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 22.0 3.11e-01 97.9% 60.0%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 23.0 3.45e-01 98.6% 75.0%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.63 20.0 2.55e-01 70.8% 42.4%
3445382 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.61 20.0 3.57e-01 77.1% 100.0%
29093 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.60 19.0 3.54e-01 95.8% 100.0%
3939881 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 23.0 3.11e-01 93.1% 65.3%
4671845 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 20.0 2.83e-01 86.1% 61.5%
4407054 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 20.0 2.93e-01 85.4% 68.3%
3915693 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 21.0 2.97e-01 99.3% 72.3%
1700100 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 21.0 2.98e-01 99.3% 77.0%
4986026 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.51 35.0 3.21e-01 70.1% 71.4%