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JQ062992.1__AEV89289.1__phIS3501_025__00024

Bact-Vir

JQ062992.1__AEV89289.1__phIS3501_025__00024

Identity

Accession:
JQ062992 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Camtrevirus› Bacillus_phage_phIS3501

TaxID: 1124578

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.65e-01 100.0% 65.1%
1aocA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.64 51.0 3.76e-01 87.9% 80.6%
1rz3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 54.0 3.93e-01 95.5% 54.1%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.13e-01 100.0% 47.0%
4necC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 42.0 2.98e-01 72.7% 88.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.58e-01 100.0% 91.2%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 51.0 4.88e-01 95.5% 88.2%
2g0qA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.58 45.0 3.72e-01 83.3% 84.3%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.57 41.0 2.90e-01 78.8% 75.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.14e-01 95.5% 76.9%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.57 40.0 4.22e-01 100.0% 86.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 42.0 3.76e-01 100.0% 53.8%
6q61A00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.56 35.0 3.69e-01 98.5% 71.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.12e-01 100.0% 81.8%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.64e-01 100.0% 98.5%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.85e-01 98.5% 88.5%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 43.0 2.99e-01 92.4% 79.6%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 43.0 3.21e-01 100.0% 32.5%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 3.90e-01 90.9% 83.3%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 42.0 3.05e-01 100.0% 28.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.99e-01 100.0% 81.2%
2zyzB02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 33.0 2.98e-01 84.8% 45.3%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.22e-01 77.3% 80.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.51 39.0 4.20e-01 89.4% 98.2%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 40.0 3.67e-01 92.4% 84.8%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 56.0 5.51e-01 100.0% 75.7%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.44e-01 100.0% 81.0%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.05e-01 100.0% 58.9%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.13e-01 100.0% 69.3%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 55.0 5.13e-01 100.0% 67.5%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.70 54.0 5.04e-01 100.0% 67.5%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 53.0 4.87e-01 100.0% 63.5%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 51.0 5.09e-01 100.0% 77.1%
4927165 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.64 36.0 3.83e-01 100.0% 63.6%
5018 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.63 35.0 3.68e-01 100.0% 60.3%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 49.0 4.51e-01 100.0% 65.6%
4645698 2484.1.1.53 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.62 52.0 3.78e-01 95.5% 35.1%
2664910 2484.1.1.53 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.61 52.0 3.73e-01 95.5% 33.9%
3574486 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.61 38.0 4.29e-01 97.0% 84.0%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.53e-01 100.0% 66.3%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 42.0 4.32e-01 98.5% 83.1%
4018119 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 39.0 2.50e-01 74.2% 86.0%
5040050 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.56 47.0 3.96e-01 93.9% 59.1%
3596265 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.18e-01 97.0% 69.0%
3719143 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 41.0 3.34e-01 83.3% 70.4%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 45.0 4.36e-01 98.5% 84.0%
157323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.64e-01 100.0% 98.5%
3722114 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.54 40.0 3.15e-01 83.3% 71.0%
4043935 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 40.0 3.30e-01 83.3% 66.2%
5052550 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 40.0 3.32e-01 83.3% 71.2%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 45.0 4.39e-01 100.0% 96.0%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.52 45.0 4.27e-01 100.0% 86.3%
3847863 385.1.1.8 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN 0.52 41.0 3.73e-01 86.4% 78.9%
143267 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.52 38.0 3.24e-01 83.3% 70.1%
3586908 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.42e-01 84.8% 80.0%
3531794 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.51 40.0 3.06e-01 92.4% 47.6%
5043506 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 39.0 3.31e-01 89.4% 81.6%
4941928 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 38.0 3.22e-01 83.3% 71.7%
4110324 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.50 42.0 4.07e-01 100.0% 91.3%
3256904 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.50 38.0 3.16e-01 84.8% 92.8%
4057537 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.50 37.0 3.15e-01 83.3% 68.8%
4172290 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.50 37.0 3.08e-01 81.8% 67.7%
4987602 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.50 37.0 3.13e-01 83.3% 68.8%