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JQ066768.1__AFA44860.1__RcapNL_00020__00020
Bact-VirJQ066768.1__AFA44860.1__RcapNL_00020__00020
Identity
- Accession:
- JQ066768 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Taxonomy
TaxID: 1131316
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 111-178
Domain cluster:
representative
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.80 | 74.0 | 6.63e-01 | 100.0% | 84.6% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.79 | 71.0 | 6.54e-01 | 100.0% | 83.9% |
| 3e1yE01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.79 | 71.0 | 6.58e-01 | 100.0% | 91.9% |
| 1r5bA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.78 | 71.0 | 6.48e-01 | 100.0% | 88.8% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.75 | 62.0 | 5.65e-01 | 100.0% | 68.9% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.75 | 63.0 | 5.48e-01 | 92.6% | 75.7% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.73 | 57.0 | 5.88e-01 | 83.8% | 88.9% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 59.0 | 5.84e-01 | 100.0% | 88.7% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.71 | 58.0 | 4.90e-01 | 88.2% | 72.1% |
| 2eqnA01 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.71 | 62.0 | 5.78e-01 | 100.0% | 88.5% |
| 3kw3B01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.71 | 63.0 | 4.92e-01 | 100.0% | 59.2% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.70 | 64.0 | 5.63e-01 | 100.0% | 70.4% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.70 | 62.0 | 5.71e-01 | 100.0% | 87.6% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.70 | 62.0 | 5.29e-01 | 100.0% | 87.2% |
| 3co8A01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.70 | 62.0 | 4.80e-01 | 100.0% | 56.1% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.69 | 61.0 | 5.98e-01 | 100.0% | 92.0% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.69 | 52.0 | 4.98e-01 | 80.9% | 81.0% |
| 3oo2A01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.69 | 61.0 | 4.75e-01 | 100.0% | 54.0% |
| 4lusB01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.68 | 60.0 | 4.67e-01 | 100.0% | 57.0% |
| 2qtlA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.68 | 59.0 | 5.14e-01 | 100.0% | 97.2% |
| 3hurA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.67 | 59.0 | 4.48e-01 | 100.0% | 51.6% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 54.0 | 4.79e-01 | 89.7% | 73.5% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.66 | 59.0 | 5.51e-01 | 100.0% | 83.3% |
| 2f9hA00 | 2.40.33.40 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › Phosphotransferase system, glucitol/sorbitol-specific IIA component | 0.66 | 55.0 | 4.72e-01 | 100.0% | 95.0% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 57.0 | 4.77e-01 | 100.0% | 84.4% |
| 4g6iB01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 57.0 | 5.25e-01 | 100.0% | 87.6% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 53.0 | 4.02e-01 | 97.1% | 71.3% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.63 | 54.0 | 4.37e-01 | 100.0% | 63.4% |
| 4v15A01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.63 | 53.0 | 4.22e-01 | 100.0% | 45.1% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.62 | 49.0 | 4.81e-01 | 86.8% | 88.0% |
| 3laeA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.62 | 45.0 | 4.34e-01 | 79.4% | 98.8% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.00e-01 | 97.1% | 78.7% |
| 2p13A00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.60 | 44.0 | 4.13e-01 | 79.4% | 76.5% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.59 | 51.0 | 4.46e-01 | 100.0% | 90.8% |
| 7xc8A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.59 | 49.0 | 4.48e-01 | 100.0% | 99.0% |
| 1mbmA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 46.0 | 4.54e-01 | 92.6% | 81.6% |
| 4zj9A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 3.81e-01 | 82.4% | 98.9% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.55 | 39.0 | 4.10e-01 | 86.8% | 83.9% |
| 3f3zA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 42.0 | 3.98e-01 | 83.8% | 82.9% |
| 2d7pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.67e-01 | 86.8% | 77.7% |
| 2cr6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 4.21e-01 | 100.0% | 82.4% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.55 | 44.0 | 2.69e-01 | 100.0% | 12.5% |
| 2vz6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 41.0 | 3.94e-01 | 83.8% | 84.3% |
| 2acxA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 43.0 | 3.95e-01 | 88.2% | 81.3% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 40.0 | 3.78e-01 | 82.4% | 80.5% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 4.56e-01 | 100.0% | 96.8% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 4.63e-01 | 100.0% | 96.8% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.54 | 42.0 | 3.04e-01 | 88.2% | 49.3% |
| 5jzjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 40.0 | 3.71e-01 | 83.8% | 73.4% |
| 5ldyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.92e-01 | 95.6% | 83.0% |
| 2c9aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.98e-01 | 97.1% | 91.8% |
| 4c0tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 42.0 | 3.89e-01 | 89.7% | 81.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 43.0 | 4.53e-01 | 100.0% | 96.8% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 41.0 | 4.24e-01 | 100.0% | 89.2% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 43.0 | 3.91e-01 | 98.5% | 77.5% |
| 3c8cB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.20e-01 | 79.4% | 64.6% |
| 1uctA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.96e-01 | 98.5% | 75.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 42.0 | 4.23e-01 | 100.0% | 89.9% |
| 2pmwB02 | 2.60.120.690 | Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 | 0.51 | 42.0 | 3.14e-01 | 100.0% | 85.1% |
ECOD (84)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513769 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.82 | 75.0 | 7.29e-01 | 100.0% | 89.3% |
| 5029965 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 76.0 | 7.03e-01 | 100.0% | 92.9% |
| 3965861 | 1.1.7.129 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Rcc01698_C | 0.82 | 74.0 | 6.72e-01 | 100.0% | 97.8% |
| 3605852 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.80 | 73.0 | 6.50e-01 | 100.0% | 81.1% |
| 3962889 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 71.0 | 6.21e-01 | 100.0% | 79.0% |
| 3604862 | 7526.1.1.2 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › EF-G_D2 | 0.77 | 71.0 | 4.74e-01 | 100.0% | 31.7% |
| 4880414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 65.0 | 6.48e-01 | 100.0% | 91.3% |
| 4596341 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.76 | 70.0 | 6.18e-01 | 100.0% | 76.8% |
| 4027218 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 69.0 | 6.57e-01 | 100.0% | 87.5% |
| 4235076 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 65.0 | 6.20e-01 | 100.0% | 81.2% |
| 4949095 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.76 | 62.0 | 3.83e-01 | 98.5% | 15.9% |
| 4976800 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.75 | 69.0 | 6.24e-01 | 100.0% | 78.9% |
| 4668791 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.75 | 62.0 | 5.39e-01 | 91.2% | 65.7% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 68.0 | 6.20e-01 | 100.0% | 82.2% |
| 4934153 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.74 | 67.0 | 5.97e-01 | 100.0% | 78.9% |
| 3058418 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.74 | 57.0 | 4.97e-01 | 83.8% | 70.6% |
| 3177070 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.74 | 67.0 | 6.32e-01 | 100.0% | 95.0% |
| 4638448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 67.0 | 5.73e-01 | 100.0% | 74.3% |
| 3642150 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 64.0 | 5.77e-01 | 100.0% | 70.5% |
| 4496887 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 67.0 | 5.62e-01 | 100.0% | 62.7% |
| 4492784 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 65.0 | 5.38e-01 | 100.0% | 69.2% |
| 4521547 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 65.0 | 5.94e-01 | 100.0% | 81.1% |
| 4529321 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 65.0 | 5.44e-01 | 100.0% | 73.0% |
| 4542561 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 65.0 | 5.55e-01 | 100.0% | 76.4% |
| 4155389 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 65.0 | 5.46e-01 | 100.0% | 72.2% |
| 4152219 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 65.0 | 5.29e-01 | 100.0% | 68.0% |
| 4108035 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 65.0 | 5.16e-01 | 100.0% | 78.5% |
| 4496370 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 65.0 | 5.29e-01 | 100.0% | 67.2% |
| 4947671 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 64.0 | 6.10e-01 | 100.0% | 100.0% |
| 4061072 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 65.0 | 5.28e-01 | 100.0% | 66.4% |
| 5025767 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 66.0 | 5.97e-01 | 100.0% | 77.8% |
| 4995639 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 65.0 | 6.16e-01 | 100.0% | 93.8% |
| 4066146 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 63.0 | 5.43e-01 | 100.0% | 62.9% |
| 4215826 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 64.0 | 5.46e-01 | 100.0% | 75.5% |
| 4945251 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 65.0 | 5.69e-01 | 100.0% | 70.0% |
| 4244186 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 64.0 | 5.40e-01 | 100.0% | 73.0% |
| 4280632 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 64.0 | 5.46e-01 | 100.0% | 76.4% |
| 4182085 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 64.0 | 5.37e-01 | 100.0% | 73.0% |
| 4110022 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 64.0 | 5.39e-01 | 100.0% | 73.0% |
| 4258762 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 63.0 | 5.27e-01 | 100.0% | 69.2% |
| 4300660 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 64.0 | 5.27e-01 | 100.0% | 70.0% |
| 5079595 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 64.0 | 5.69e-01 | 100.0% | 78.9% |
| 4391325 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 63.0 | 5.39e-01 | 100.0% | 75.5% |
| 4426391 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 63.0 | 5.31e-01 | 100.0% | 73.0% |
| 5048557 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 64.0 | 5.83e-01 | 100.0% | 78.9% |
| 4491659 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 64.0 | 5.35e-01 | 100.0% | 68.7% |
| 4079417 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 63.0 | 5.30e-01 | 100.0% | 73.0% |
| 4159958 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 63.0 | 5.36e-01 | 100.0% | 76.4% |
| 5036581 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 65.0 | 5.64e-01 | 100.0% | 68.0% |
| 5079180 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 64.0 | 5.80e-01 | 100.0% | 83.3% |
| 4581061 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.70 | 63.0 | 5.35e-01 | 100.0% | 76.4% |
| 4402448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.70 | 62.0 | 5.18e-01 | 100.0% | 77.5% |
| 3602200 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 62.0 | 6.16e-01 | 100.0% | 95.7% |
| 4995824 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 61.0 | 6.02e-01 | 97.1% | 95.9% |
| 4114061 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.70 | 63.0 | 5.43e-01 | 100.0% | 78.1% |
| 4955533 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 63.0 | 5.44e-01 | 100.0% | 69.5% |
| 4125814 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.70 | 58.0 | 5.70e-01 | 100.0% | 85.3% |
| 3975275 | 1.1.13.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 | 0.70 | 55.0 | 4.91e-01 | 85.3% | 67.4% |
| 4147655 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.69 | 62.0 | 5.46e-01 | 100.0% | 69.0% |
| 4322439 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.69 | 62.0 | 5.27e-01 | 100.0% | 61.8% |
| 4083044 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 59.0 | 5.74e-01 | 100.0% | 88.0% |
| 2896442 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.69 | 60.0 | 5.45e-01 | 100.0% | 86.0% |
| 4045917 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.69 | 61.0 | 5.14e-01 | 100.0% | 67.0% |
| 3946118 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 52.0 | 5.08e-01 | 82.4% | 100.0% |
| 4932394 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 59.0 | 5.18e-01 | 100.0% | 65.7% |
| 4970805 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 60.0 | 5.54e-01 | 100.0% | 77.6% |
| 1790393 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 59.0 | 5.58e-01 | 100.0% | 82.9% |
| 3280060 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.67 | 58.0 | 5.38e-01 | 100.0% | 87.8% |
| 4959432 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.67 | 58.0 | 5.53e-01 | 100.0% | 81.2% |
| 5064404 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.66 | 51.0 | 5.35e-01 | 88.2% | 93.3% |
| 163768 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 59.0 | 5.48e-01 | 100.0% | 82.4% |
| 3933549 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 45.0 | 2.82e-01 | 75.0% | 25.8% |
| 3264420 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.63 | 53.0 | 5.14e-01 | 100.0% | 86.3% |
| 4986214 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.58 | 49.0 | 4.50e-01 | 100.0% | 87.4% |
| 3275076 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.57 | 48.0 | 4.45e-01 | 100.0% | 80.0% |
| 3905931 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.56 | 47.0 | 4.35e-01 | 100.0% | 77.8% |
| 4955177 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 46.0 | 4.14e-01 | 100.0% | 66.7% |
| 3759348 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.55 | 47.0 | 4.60e-01 | 100.0% | 90.7% |
| 3266205 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.55 | 45.0 | 4.13e-01 | 100.0% | 82.0% |
| 7161 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.54 | 40.0 | 3.78e-01 | 82.4% | 80.5% |
| 3625411 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.88e-01 | 100.0% | 80.0% |
| 4494608 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.52 | 43.0 | 3.89e-01 | 98.5% | 92.0% |
| 3798178 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 4.05e-01 | 100.0% | 94.4% |
| 3277157 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 4.05e-01 | 100.0% | 88.0% |
D2
medium
residues 1-24_41-90_183-216
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 30.0 | 3.76e-01 | 88.9% | 71.9% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.64 | 48.0 | 5.02e-01 | 93.5% | 86.9% |
| 1ddgA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 40.0 | 3.95e-01 | 92.6% | 62.3% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.60 | 52.0 | 4.76e-01 | 97.2% | 91.8% |
| 3jr1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 37.0 | 3.85e-01 | 86.1% | 66.7% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.59 | 27.0 | 3.70e-01 | 86.1% | 86.8% |
| 3nrfA00 | 2.60.40.4110 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 | 0.59 | 44.0 | 4.51e-01 | 90.7% | 83.3% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.55 | 46.0 | 4.40e-01 | 92.6% | 94.6% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 36.0 | 3.65e-01 | 93.5% | 69.4% |
| 4efjA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 38.0 | 3.52e-01 | 97.2% | 59.3% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 34.0 | 3.35e-01 | 93.5% | 59.0% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.51 | 45.0 | 4.47e-01 | 97.2% | 97.3% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 36.0 | 3.35e-01 | 93.5% | 55.9% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 40.0 | 3.52e-01 | 98.1% | 56.5% |
| 2crvA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 36.0 | 3.84e-01 | 93.5% | 86.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981654 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.73 | 66.0 | 6.63e-01 | 97.2% | 100.0% |
| 3387224 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.69 | 49.0 | 4.58e-01 | 92.6% | 60.0% |
| 4545902 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 41.0 | 4.41e-01 | 89.8% | 72.2% |
| 4616161 | 304.8.1.47 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd | 0.66 | 39.0 | 4.03e-01 | 88.0% | 61.0% |
| 3462522 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 38.0 | 3.61e-01 | 87.0% | 50.4% |
| 3606091 | 7.1.1.16 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › DUF7762 | 0.62 | 53.0 | 5.19e-01 | 91.7% | 99.1% |
| 3964535 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.59 | 47.0 | 4.64e-01 | 93.5% | 80.0% |
| 3934459 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 38.0 | 3.93e-01 | 89.8% | 72.0% |
| 3353468 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.57 | 38.0 | 3.04e-01 | 90.7% | 33.2% |
| 3784088 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.55 | 47.0 | 3.71e-01 | 92.6% | 76.3% |
| 4855517 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.55 | 36.0 | 2.90e-01 | 90.7% | 31.4% |
| 3992801 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.54 | 35.0 | 3.77e-01 | 95.4% | 76.7% |
| 4952167 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.54 | 36.0 | 3.46e-01 | 95.4% | 56.9% |
| 5071970 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.53 | 42.0 | 3.60e-01 | 85.2% | 83.4% |
| 3602169 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 32.0 | 3.57e-01 | 91.7% | 76.5% |
| 3271910 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.52 | 44.0 | 3.77e-01 | 92.6% | 86.9% |
| 4937023 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 37.0 | 3.88e-01 | 94.4% | 82.0% |
| 4355163 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.50 | 37.0 | 3.47e-01 | 94.4% | 62.4% |
| 4001819 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.50 | 34.0 | 3.61e-01 | 95.4% | 78.9% |
| 3998997 | 389.1.2.9 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 | 0.50 | 34.0 | 3.68e-01 | 95.4% | 83.3% |