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JQ066768.1__AFA44873.1__RcapNL_00033__00033
Bact-VirJQ066768.1__AFA44873.1__RcapNL_00033__00033
Identity
- Accession:
- JQ066768 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Taxonomy
TaxID: 1131316
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-73
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 43.0 | 4.66e-01 | 95.8% | 82.5% |
| 6se8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 43.0 | 3.83e-01 | 70.8% | 63.0% |
| 4e6zA02 | 3.40.1350.100 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 48.0 | 4.55e-01 | 83.3% | 95.5% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 48.0 | 4.78e-01 | 86.1% | 93.4% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 41.0 | 4.00e-01 | 75.0% | 89.9% |
| 1khbA03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.57 | 49.0 | 3.43e-01 | 100.0% | 64.7% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 41.0 | 3.82e-01 | 77.8% | 69.8% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 41.0 | 3.17e-01 | 76.4% | 94.7% |
| 3l84A03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 48.0 | 4.18e-01 | 98.6% | 94.9% |
| 4r75A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 45.0 | 3.56e-01 | 88.9% | 96.3% |
| 1ycoA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.55 | 46.0 | 3.22e-01 | 100.0% | 63.0% |
| 3fz0D00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.55 | 43.0 | 2.84e-01 | 87.5% | 70.6% |
| 5u3fA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.52 | 43.0 | 3.36e-01 | 100.0% | 59.9% |
| 2k2qB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 3.11e-01 | 98.6% | 97.1% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.51 | 37.0 | 3.55e-01 | 76.4% | 78.0% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 42.0 | 3.83e-01 | 95.8% | 76.2% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 43.0 | 3.90e-01 | 98.6% | 75.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3815036 | 3397.1.1.0 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 | 0.68 | 60.0 | 5.06e-01 | 100.0% | 84.8% |
| 3313016 | 3397.1.1.2 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 › DUF3110 | 0.67 | 59.0 | 5.05e-01 | 100.0% | 85.0% |
| 4468258 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.65 | 50.0 | 4.66e-01 | 86.1% | 94.7% |
| 3594101 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.64 | 46.0 | 3.58e-01 | 75.0% | 38.7% |
| 3373154 | 3397.1.1.0 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 | 0.64 | 50.0 | 4.90e-01 | 86.1% | 83.7% |
| 3517817 | 304.9.1.20 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 | 0.63 | 45.0 | 4.20e-01 | 77.8% | 94.7% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 40.0 | 4.50e-01 | 70.8% | 100.0% |
| None | — | 0.61 | 44.0 | 2.96e-01 | 77.8% | 88.1% | |
| 1178362 | 3397.1.1.1 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 | 0.61 | 50.0 | 4.46e-01 | 93.1% | 87.6% |
| 3365225 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.60 | 45.0 | 3.80e-01 | 79.2% | 48.3% |
| 3931960 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 51.0 | 3.72e-01 | 100.0% | 68.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.59 | 44.0 | 4.12e-01 | 80.6% | 73.3% |
| 3666940 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.58 | 43.0 | 3.70e-01 | 80.6% | 48.3% |
| 3230414 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.58 | 41.0 | 3.57e-01 | 75.0% | 65.5% |
| 3783820 | 887.1.1.1 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 | 0.57 | 41.0 | 3.94e-01 | 77.8% | 76.5% |
| 3340123 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.55 | 39.0 | 3.64e-01 | 75.0% | 68.9% |
| 3581515 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.54 | 37.0 | 3.28e-01 | 73.6% | 70.3% |
| 4024688 | 7579.1.1.65 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF726 | 0.54 | 44.0 | 3.14e-01 | 98.6% | 90.9% |
| 4886405 | 4002.1.1.2 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQ_synthase | 0.54 | 40.0 | 3.15e-01 | 83.3% | 78.2% |
| 3592623 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.53 | 42.0 | 3.03e-01 | 91.7% | 49.6% |
| 1546392 | 10.2.1.66 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV-like_capsid | 0.51 | 35.0 | 2.74e-01 | 72.2% | 77.1% |
| 4018289 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 37.0 | 3.06e-01 | 80.6% | 91.7% |
| 4053989 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.50 | 36.0 | 3.03e-01 | 79.2% | 80.0% |