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JQ066768.1__AFA44894.1__RcapNL_00054__00054

Bact-Vir

JQ066768.1__AFA44894.1__RcapNL_00054__00054

Identity

Accession:
JQ066768 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-89
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 48.0 4.93e-01 70.6% 100.0%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 47.0 4.47e-01 72.9% 78.2%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 48.0 4.44e-01 75.3% 77.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 43.0 3.79e-01 70.6% 47.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 48.0 4.98e-01 80.0% 86.3%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.64 46.0 4.28e-01 74.1% 91.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 45.0 4.01e-01 72.9% 65.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.64 48.0 4.12e-01 81.2% 49.3%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.63 46.0 4.99e-01 77.6% 91.5%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 3.69e-01 80.0% 64.5%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 47.0 3.14e-01 78.8% 41.4%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 3.97e-01 81.2% 87.9%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 43.0 3.72e-01 74.1% 80.5%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.75e-01 74.1% 57.6%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 3.89e-01 82.4% 85.1%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.59 41.0 3.33e-01 70.6% 93.5%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 44.0 3.25e-01 78.8% 39.6%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 4.02e-01 71.8% 93.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 46.0 4.06e-01 83.5% 73.4%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.59 47.0 3.62e-01 85.9% 87.2%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.59 47.0 3.40e-01 87.1% 71.0%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 43.0 3.61e-01 77.6% 60.4%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.76e-01 72.9% 82.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 41.0 3.44e-01 72.9% 76.0%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.80e-01 71.8% 100.0%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 3.54e-01 74.1% 74.1%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.58 41.0 3.45e-01 72.9% 92.1%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 47.0 3.24e-01 91.8% 43.3%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 41.0 3.55e-01 74.1% 76.9%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.58 46.0 3.43e-01 87.1% 71.7%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 41.0 4.15e-01 75.3% 88.1%
3hkzG00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.69e-01 74.1% 79.6%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.96e-01 87.1% 30.9%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.57 39.0 3.16e-01 70.6% 60.5%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 39.0 3.20e-01 70.6% 46.6%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.57 39.0 3.36e-01 72.9% 82.2%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.56 44.0 3.53e-01 85.9% 90.4%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 38.0 2.68e-01 70.6% 70.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.56 40.0 4.03e-01 74.1% 85.7%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 38.0 3.82e-01 70.6% 98.9%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.56 39.0 3.53e-01 72.9% 87.9%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 2.89e-01 74.1% 67.2%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.56 40.0 3.06e-01 74.1% 66.8%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 2.98e-01 81.2% 86.5%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 39.0 3.43e-01 75.3% 64.4%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.54 36.0 4.16e-01 71.8% 93.5%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.54 38.0 3.06e-01 74.1% 70.4%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 37.0 2.88e-01 70.6% 92.2%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 38.0 3.00e-01 76.5% 78.9%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 37.0 3.82e-01 71.8% 100.0%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 2.82e-01 72.9% 68.7%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 42.0 3.13e-01 91.8% 81.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036807 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.69 43.0 4.20e-01 76.5% 56.8%
2998372 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 38.0 4.73e-01 74.1% 88.7%
3219425 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.65 50.0 4.38e-01 81.2% 64.0%
5792 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.65 43.0 3.78e-01 70.6% 47.1%
3591928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 52.0 3.35e-01 84.7% 27.6%
3622698 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 48.0 3.20e-01 78.8% 32.4%
5044805 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 43.0 4.69e-01 70.6% 82.9%
3957060 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.64 47.0 3.90e-01 76.5% 81.4%
3254501 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 44.0 3.04e-01 83.5% 21.1%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.64 46.0 3.45e-01 75.3% 72.7%
5004221 5.1.5.234 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › LVIVD 0.63 47.0 3.15e-01 78.8% 43.3%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.63 43.0 3.98e-01 70.6% 56.4%
3961795 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.63 45.0 2.81e-01 74.1% 20.4%
3490231 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.63 48.0 3.15e-01 81.2% 58.3%
3608681 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.62 50.0 3.18e-01 87.1% 37.4%
5039195 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.62 48.0 3.55e-01 82.4% 61.9%
3940735 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 46.0 3.06e-01 78.8% 75.5%
5046089 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.62 53.0 3.76e-01 92.9% 82.7%
4390303 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.62 53.0 3.18e-01 92.9% 29.7%
4879580 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.62 45.0 3.75e-01 77.6% 64.1%
3797677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.44e-01 88.2% 88.1%
None 0.61 50.0 2.99e-01 90.6% 22.6%
3599747 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 46.0 3.09e-01 80.0% 37.0%
3188230 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 3.13e-01 80.0% 37.4%
4338527 5.1.5.145 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A 0.61 46.0 2.92e-01 81.2% 35.9%
4570530 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.61 42.0 3.94e-01 71.8% 97.1%
3944846 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.60 47.0 4.33e-01 87.1% 74.8%
3924881 206.1.1.63 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PIP49_C+PIP49_N 0.60 51.0 3.46e-01 94.1% 72.8%
3707278 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.50e-01 85.9% 52.4%
3479716 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.59 42.0 4.25e-01 74.1% 83.5%
4000029 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.59 45.0 3.05e-01 81.2% 38.5%
4259063 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.59 50.0 3.42e-01 94.1% 93.4%
3987244 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.59 50.0 3.50e-01 94.1% 95.1%
3496663 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 49.0 3.49e-01 92.9% 76.7%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 3.15e-01 84.7% 40.9%
3478270 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.58 46.0 2.91e-01 88.2% 49.1%
3402824 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.58 47.0 3.10e-01 91.8% 43.9%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 44.0 4.39e-01 82.4% 80.0%
4945459 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.58 43.0 2.93e-01 80.0% 30.6%
3908602 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 46.0 3.00e-01 85.9% 39.1%
3458523 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.57 42.0 3.82e-01 77.6% 88.7%
4964119 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.57 46.0 3.74e-01 87.1% 83.1%
5014493 331.3.1.12 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.57 40.0 2.91e-01 74.1% 42.2%
119302 3146.1.1.0 a+b complex topology › gH main domain › gH main domain › gH main domain 0.56 45.0 3.05e-01 88.2% 91.3%
3884108 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.56 43.0 3.04e-01 82.4% 61.1%
4969372 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.75e-01 88.2% 17.8%
3588277 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.55 44.0 4.00e-01 87.1% 72.2%
4214195 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.55 45.0 3.48e-01 92.9% 87.6%
4433289 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.55 45.0 3.30e-01 90.6% 88.9%
4991973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 37.0 2.57e-01 70.6% 23.9%
3415735 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.54 38.0 3.75e-01 74.1% 81.1%
3548957 5.1.4.241 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A 0.53 44.0 2.82e-01 92.9% 42.7%
3799467 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.52 44.0 3.58e-01 91.8% 51.6%
3585692 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 36.0 3.05e-01 74.1% 52.0%
3331262 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.51 35.0 3.44e-01 71.8% 84.2%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.51 41.0 3.57e-01 87.1% 70.8%
3441723 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 40.0 2.87e-01 88.2% 51.2%
7054 881.2.1.1 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.51 42.0 3.69e-01 90.6% 78.7%