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JQ066768.1__AFA44902.1__RcapNL_00062__00062

Bact-Vir

JQ066768.1__AFA44902.1__RcapNL_00062__00062

Identity

Accession:
JQ066768 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.70 55.0 4.43e-01 83.3% 75.4%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 61.0 3.93e-01 100.0% 38.3%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.69 61.0 3.95e-01 100.0% 50.2%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.69 49.0 4.26e-01 75.8% 52.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 51.0 3.97e-01 77.3% 40.3%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.68 47.0 3.14e-01 81.8% 19.2%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 60.0 3.86e-01 100.0% 64.7%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.67 46.0 4.00e-01 71.2% 53.0%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.66 58.0 3.68e-01 100.0% 34.9%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 49.0 3.67e-01 78.8% 35.2%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 50.0 3.71e-01 80.3% 34.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 57.0 4.21e-01 98.5% 41.2%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.65 42.0 3.34e-01 100.0% 32.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 46.0 4.53e-01 74.2% 81.7%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.64 49.0 4.38e-01 83.3% 62.8%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 45.0 4.64e-01 74.2% 95.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.29e-01 100.0% 59.3%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 54.0 3.50e-01 100.0% 97.8%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.37e-01 100.0% 36.6%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.41e-01 100.0% 30.7%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 50.0 3.96e-01 95.5% 41.8%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 54.0 3.90e-01 98.5% 89.1%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 4.34e-01 78.8% 90.8%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.60 40.0 3.55e-01 75.8% 46.9%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 53.0 4.41e-01 100.0% 89.9%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 47.0 3.98e-01 86.4% 98.2%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.59 40.0 4.36e-01 71.2% 100.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 50.0 4.00e-01 100.0% 76.3%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 48.0 3.51e-01 98.5% 60.7%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 3.94e-01 100.0% 64.3%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.56 44.0 4.17e-01 87.9% 71.8%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 44.0 3.80e-01 95.5% 54.2%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 51.0 3.24e-01 100.0% 22.2%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 48.0 4.13e-01 100.0% 84.3%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 44.0 3.89e-01 89.4% 89.8%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.26e-01 100.0% 81.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 45.0 3.94e-01 98.5% 71.4%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 43.0 3.30e-01 98.5% 84.4%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.62e-01 92.4% 92.1%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.57e-01 100.0% 97.9%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.25e-01 77.3% 88.2%
2zxdA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 3.78e-01 93.9% 94.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003053 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.82 60.0 4.40e-01 78.8% 32.3%
4935086 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.82 60.0 4.40e-01 78.8% 32.3%
3284714 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.75 50.0 5.17e-01 71.2% 73.0%
4188237 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.74 50.0 5.36e-01 71.2% 83.6%
3492308 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.74 56.0 3.44e-01 81.8% 91.8%
3957000 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 51.0 3.05e-01 72.7% 65.7%
3999240 5.1.5.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.73 55.0 3.81e-01 80.3% 72.1%
4977860 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.71 49.0 2.97e-01 71.2% 68.0%
3613225 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.71 52.0 4.40e-01 78.8% 52.7%
3994190 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.71 61.0 3.87e-01 98.5% 56.2%
3606549 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.71 52.0 4.41e-01 78.8% 56.9%
3915618 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 60.0 3.40e-01 92.4% 28.9%
3781182 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 60.0 3.65e-01 93.9% 28.5%
3798068 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 60.0 4.17e-01 97.0% 68.4%
3173549 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 60.0 3.66e-01 93.9% 34.2%
3990141 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 60.0 3.80e-01 95.5% 59.4%
3894385 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 57.0 3.64e-01 89.4% 41.3%
3622284 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.69 61.0 3.68e-01 98.5% 64.9%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.69 57.0 5.59e-01 100.0% 85.7%
3213945 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.68 54.0 3.39e-01 86.4% 90.4%
3361063 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.68 59.0 3.90e-01 95.5% 42.3%
4280626 558.1.1.26 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.68 59.0 3.58e-01 97.0% 28.2%
3953844 304.24.1.34 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF3145 0.68 47.0 3.63e-01 72.7% 89.7%
3221976 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 60.0 3.69e-01 100.0% 54.0%
3533653 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.67 58.0 3.53e-01 100.0% 29.7%
3257215 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 58.0 3.53e-01 95.5% 50.2%
3575357 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 58.0 3.71e-01 98.5% 51.0%
3557605 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 57.0 3.49e-01 97.0% 35.3%
5036758 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 57.0 3.83e-01 100.0% 74.6%
3254426 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 53.0 4.22e-01 87.9% 70.4%
3942731 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 46.0 4.10e-01 71.2% 100.0%
3282845 304.8.1.26 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3145 0.66 46.0 3.53e-01 72.7% 90.7%
3500446 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 53.0 3.47e-01 92.4% 26.8%
4428983 5.1.4.321 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.66 55.0 3.38e-01 97.0% 36.4%
4043414 5.1.4.311 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NUP159_NUP214 0.66 57.0 3.70e-01 97.0% 43.3%
3851509 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.65 56.0 3.37e-01 100.0% 43.8%
4030008 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 56.0 3.55e-01 93.9% 43.5%
3879258 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.64 55.0 3.40e-01 95.5% 32.5%
3777718 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 54.0 3.07e-01 97.0% 21.8%
3608863 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.64 54.0 3.28e-01 100.0% 23.4%
4992194 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.63 47.0 4.22e-01 78.8% 86.7%
5022923 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.63 51.0 4.72e-01 89.4% 87.1%
3259865 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 53.0 3.46e-01 98.5% 35.6%
3613171 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 51.0 3.85e-01 100.0% 74.7%
4167701 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 51.0 3.26e-01 98.5% 29.6%
4216435 3735.1.1.12 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.62 47.0 2.81e-01 81.8% 11.3%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.62 42.0 4.20e-01 71.2% 67.1%
3999383 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 53.0 3.41e-01 100.0% 43.0%
3576278 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.61 50.0 3.19e-01 100.0% 40.0%
5030390 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.60 46.0 4.24e-01 84.8% 94.4%
3713988 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 2.82e-01 100.0% 26.7%
3572103 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.60 53.0 4.22e-01 100.0% 70.4%
1007197 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 50.0 4.80e-01 97.0% 88.2%
5053933 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 47.0 4.73e-01 90.9% 98.5%
4961284 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.58 51.0 3.87e-01 100.0% 75.8%
5048797 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 43.0 3.95e-01 84.8% 80.0%
4547005 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.58 51.0 3.92e-01 98.5% 73.3%
3364812 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 48.0 3.40e-01 100.0% 50.9%
2900291 71.1.1.11 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PNGase_F-II_N 0.56 48.0 3.59e-01 100.0% 83.0%
3704328 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 44.0 4.18e-01 93.9% 78.3%
3957126 244.2.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.54 45.0 4.15e-01 92.4% 71.8%
3279316 244.2.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C 0.54 41.0 3.97e-01 83.3% 74.7%
3570861 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 45.0 3.16e-01 95.5% 49.1%
3332764 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 39.0 3.61e-01 87.9% 63.5%
3188851 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.50 39.0 3.37e-01 86.4% 91.8%