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JQ067089.2__ALH23673.1__PaMx28_73__00073
Bact-VirJQ067089.2__ALH23673.1__PaMx28_73__00073
Identity
- Accession:
- JQ067089 ↗
- Kingdom:
- phage
Quality
65.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Mesyanzhinovviridae›
Pamexvirus›
Pseudomonas_phage_PaMx28
TaxID: 1175659
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-115
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4is7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.76 | 43.0 | 3.78e-01 | 74.5% | 40.3% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.71 | 53.0 | 3.67e-01 | 80.4% | 24.6% |
| 2be7A01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.71 | 58.0 | 4.07e-01 | 88.2% | 92.1% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 48.0 | 4.16e-01 | 74.5% | 48.1% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.68 | 50.0 | 4.19e-01 | 84.3% | 45.1% |
| 3nf2A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.66 | 50.0 | 3.08e-01 | 84.3% | 20.7% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 4.61e-01 | 78.4% | 81.8% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.61 | 48.0 | 4.35e-01 | 86.3% | 78.6% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 46.0 | 2.98e-01 | 84.3% | 34.0% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.58 | 42.0 | 3.74e-01 | 76.5% | 62.2% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.56 | 41.0 | 3.41e-01 | 78.4% | 50.6% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 47.0 | 3.21e-01 | 100.0% | 86.8% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.53 | 40.0 | 3.97e-01 | 86.3% | 92.7% |
| 1q15A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 41.0 | 2.87e-01 | 100.0% | 96.1% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 38.0 | 2.80e-01 | 90.2% | 30.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5021988 | 148.1.3.409 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › BrxL_ATPase | 0.76 | 52.0 | 4.29e-01 | 72.5% | 47.8% |
| 136495 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.71 | 53.0 | 3.67e-01 | 80.4% | 24.6% |
| 3220480 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 49.0 | 4.68e-01 | 74.5% | 70.0% |
| 3447570 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 47.0 | 3.54e-01 | 76.5% | 44.8% |
| 3450000 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 52.0 | 3.94e-01 | 94.1% | 80.0% |
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.63 | 51.0 | 4.80e-01 | 86.3% | 75.0% |
| 4453675 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.62 | 43.0 | 4.09e-01 | 86.3% | 60.0% |
| 3995914 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.62 | 52.0 | 3.35e-01 | 96.1% | 25.7% |
| 4996283 | 101.43.1.4 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › HTH_AsnC-type | 0.61 | 43.0 | 4.05e-01 | 76.5% | 61.5% |
| 4453525 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.60 | 47.0 | 4.33e-01 | 86.3% | 66.2% |
| 5015003 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.60 | 42.0 | 3.54e-01 | 78.4% | 97.0% |
| 9693 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.60 | 46.0 | 2.98e-01 | 84.3% | 34.0% |
| 3960436 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 43.0 | 2.78e-01 | 84.3% | 20.8% |
| 4476441 | 7512.1.1.47 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF3417 | 0.58 | 46.0 | 2.80e-01 | 90.2% | 78.6% |
| 3298844 | 103.11.1.1 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N | 0.55 | 42.0 | 4.08e-01 | 86.3% | 73.3% |