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JQ067093.2__ALH23481.1__PaMx74_64__00064

Bact-Vir

JQ067093.2__ALH23481.1__PaMx74_64__00064

Identity

Accession:
JQ067093 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 52.0 4.30e-01 88.4% 43.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 54.0 4.54e-01 82.6% 47.9%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 51.0 4.08e-01 82.6% 40.5%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 51.0 4.31e-01 76.8% 47.7%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 49.0 4.16e-01 79.7% 46.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 49.0 4.04e-01 79.7% 43.0%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 50.0 4.23e-01 81.2% 47.0%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 49.0 3.96e-01 79.7% 78.4%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.30e-01 88.4% 54.2%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.13e-01 82.6% 46.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 48.0 4.01e-01 88.4% 45.0%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.54e-01 71.0% 48.4%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.63 45.0 4.37e-01 75.4% 71.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 4.37e-01 81.2% 65.1%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 41.0 3.48e-01 73.9% 40.4%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.61 50.0 3.39e-01 87.0% 44.0%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.59 42.0 3.92e-01 75.4% 59.1%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 4.13e-01 75.4% 74.6%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.24e-01 73.9% 37.7%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 39.0 3.83e-01 75.4% 65.8%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 38.0 3.23e-01 71.0% 39.4%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 42.0 3.58e-01 79.7% 79.3%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.56 44.0 3.57e-01 87.0% 46.7%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.60e-01 78.3% 56.7%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.25e-01 78.3% 63.8%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.43e-01 72.5% 88.8%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.55 42.0 3.25e-01 84.1% 41.6%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.55 35.0 3.29e-01 75.4% 52.4%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.37e-01 78.3% 93.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 42.0 3.22e-01 82.6% 50.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 41.0 3.43e-01 85.5% 72.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 41.0 3.53e-01 85.5% 77.6%
2ifgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.50e-01 75.4% 86.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 39.0 3.45e-01 79.7% 54.3%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 2.76e-01 71.0% 58.1%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.42e-01 71.0% 83.5%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 36.0 3.09e-01 73.9% 78.9%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 35.0 3.49e-01 76.8% 67.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 3.14e-01 78.3% 74.2%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 38.0 3.08e-01 81.2% 72.1%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.18e-01 79.7% 83.2%
1gl4B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.20e-01 71.0% 87.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690077 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.88 42.0 2.71e-01 81.2% 12.5%
3627817 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.79 55.0 3.47e-01 88.4% 16.6%
3796100 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 67.0 5.13e-01 100.0% 45.3%
3792405 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.74 66.0 3.88e-01 100.0% 13.5%
3684015 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 53.0 4.63e-01 92.8% 52.0%
4937908 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.73 53.0 4.08e-01 87.0% 34.6%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.73 47.0 5.51e-01 72.5% 100.0%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 64.0 5.02e-01 98.6% 46.9%
None 0.71 42.0 2.34e-01 82.6% 5.5%
3925367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 52.0 4.03e-01 85.5% 36.0%
3937948 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.70 54.0 4.13e-01 89.9% 36.8%
4533094 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 60.0 4.87e-01 100.0% 50.8%
3558744 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 54.0 4.37e-01 85.5% 45.6%
3417366 312.1.1.19 a+b three layers › HIT-like › HIT-related › HIT-related › PF26216 0.70 49.0 3.75e-01 72.5% 84.3%
3931122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 48.0 4.32e-01 81.2% 52.6%
3919311 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.68 48.0 3.88e-01 76.8% 40.8%
3929366 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.67 46.0 4.01e-01 85.5% 46.7%
3286982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.67 47.0 4.18e-01 75.4% 99.0%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 55.0 4.47e-01 100.0% 48.8%
3887822 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 48.0 3.93e-01 79.7% 41.6%
3515884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 49.0 4.12e-01 85.5% 45.8%
3482603 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 43.0 3.82e-01 71.0% 46.0%
4018561 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.66 47.0 3.61e-01 75.4% 35.2%
3170723 220.1.1.95 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.66 46.0 3.88e-01 81.2% 44.3%
3576768 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 3.67e-01 88.4% 28.8%
3446884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 5.06e-01 85.5% 81.4%
3578188 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 34.0 2.43e-01 81.2% 17.4%
3390391 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.65 47.0 3.61e-01 75.4% 38.7%
3906073 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.41e-01 97.1% 55.2%
3859768 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 57.0 4.23e-01 98.6% 44.6%
3591633 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.64 51.0 4.38e-01 88.4% 53.6%
3178078 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.64 50.0 3.80e-01 85.5% 50.3%
3923613 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.64 48.0 3.60e-01 85.5% 33.3%
3173787 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 3.85e-01 78.3% 56.7%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 4.33e-01 76.8% 69.3%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.62 50.0 4.42e-01 92.8% 60.0%
3476014 220.1.1.155 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.62 43.0 3.84e-01 85.5% 50.0%
3213262 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.62 42.0 3.75e-01 71.0% 52.0%
4024503 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 39.0 3.77e-01 71.0% 56.2%
3521669 220.1.1.155 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.61 45.0 3.92e-01 82.6% 51.4%
5061930 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 3.88e-01 76.8% 53.7%
5015727 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.60 42.0 3.76e-01 79.7% 51.0%
3925891 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 38.0 3.52e-01 72.5% 48.9%
5044375 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.59 51.0 3.45e-01 92.8% 31.9%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 54.0 4.51e-01 100.0% 62.6%
3838288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 3.44e-01 72.5% 95.7%
4943785 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.48e-01 79.7% 60.7%
3249582 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.58 40.0 3.94e-01 79.7% 66.7%
4027723 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 41.0 4.12e-01 75.4% 75.7%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 40.0 4.38e-01 75.4% 94.5%
5073960 244.2.1.7 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.57 39.0 3.45e-01 71.0% 73.5%
3449957 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 47.0 4.29e-01 98.6% 68.4%
4029439 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.56 40.0 4.04e-01 79.7% 76.8%
4027687 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.56 39.0 4.18e-01 75.4% 92.7%
3692189 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 44.0 3.56e-01 87.0% 47.4%
4995609 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.28e-01 79.7% 60.7%
2641778 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.55 37.0 3.53e-01 71.0% 100.0%
3240661 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.02e-01 87.0% 48.2%
3742185 2003.1.5.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.54 48.0 2.97e-01 98.6% 85.3%
3606814 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.53 39.0 3.76e-01 76.8% 67.9%
3514659 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 37.0 3.35e-01 73.9% 55.0%
3585833 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 3.36e-01 78.3% 51.8%
3619264 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 41.0 3.80e-01 87.0% 65.6%
4028916 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.52 35.0 3.10e-01 71.0% 55.5%
3629860 223.2.1.43 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M 0.51 41.0 3.18e-01 88.4% 40.9%
3503204 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 39.0 3.48e-01 79.7% 60.0%
3451914 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.51 38.0 2.65e-01 81.2% 23.4%
3427749 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 37.0 3.87e-01 79.7% 90.8%
1406320 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.50 36.0 3.50e-01 84.1% 67.1%
3299579 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 39.0 3.97e-01 87.0% 84.3%